rs255324181 SNP Detail

Summary

• ID
  rs255324181
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60193499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGGAGCTGG GGCTGGGACT CATGCTCTAC
  TTGGGAGAAG GCCCCATGTT GGCTGGCCTG TCTTTTGTCT GGCTCCCCTC CCACTTGGGA
  GGCCTGGAGG CTTCTCCCAT GTGGGTCTTG TTACTAAGCA AGAGGCCAAG GCTCAGATCA
  R
  CTGGCTTGCC CAGGGTCTGG CTTGCAAGGG AAGAGGCTGA AGTCACGCTT TCTCATCTGG
  AGGGCAGCGA GGAGTGCCGC TCACTCAGGC AGGTGACAGG GGTGCTCTTC TCTCTGAACA
  GGTCTGGTAG CAGCCTTCAA GGTCACCACT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323325145	CHEV_10_59820468	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255324181					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60193499 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Tssr93621	transcription start site region 93621	264 bp upstream
Tssr93622	transcription start site region 93622	376 bp upstream
Tssr93623	transcription start site region 93623	762 bp upstream
Tssr97721	transcription start site region 97721	327 bp downstream
Tssr97722	transcription start site region 97722	494 bp downstream
Tssr97723	transcription start site region 97723	529 bp downstream
Vsir	V-set immunoregulatory receptor	within coordinates