rs255337784 SNP Detail

Summary

• ID
  rs255337784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:105358567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGACATTGGA ATGCCAGCAG GAAGCAAACT CTGTAGCCTC
  CACTTTATAC CGAAAGACAC AATTTATATG ACTGTCGTGG GCAACGTTTC TATTTTGCTG
  Y
  ATACCAGTCT CCTTCTCTAC TCTGTGAGCA TTAAGGAAGG CTAGAGCCGC TAACAATCGT
  TTGCTGATTT CCTCTGTAGC ACTGAGTAAT TTCGCAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323449352	CHEV_10_104959762	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255337784					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:105358567 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930588G05Rik	RIKEN cDNA 4930588G05 gene			1334 bp downstream
Rr438483	regulatory region 438483			1714 bp distal
Rr438484	regulatory region 438484			within coordinates
Rr438485	regulatory region 438485			206 bp proximal
Tmtc2	transmembrane and tetratricopeptide repeat containing 2			Intron
				Noncoding-Transcript-Variant
Tssr99169	transcription start site region 99169			911 bp upstream
Tssr99170	transcription start site region 99170			689 bp upstream