rs255343985 SNP Detail

Summary

• ID
  rs255343985
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:104127297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCACGCAG CAGGTGCCTC
  CGCCGCCGCC AGCCTCGTCG CGGAGCCGCC CCAGGTAAGG GAACTCGCCG CGCTCGGCGC
  CGCCGCGGAT CTCGGCGCCC AAGTCGCCCG GGGGCCCGGC CCAGGATACC GCACACTCCT
  GCACCTTGCT GAGCCAGTGC TTCTTCTTCT TCAACGTCTT CGACATCCCG ACCTCCGCTG
  Y
  ACCATGGGGA GCCCCCGCGC GGGCGGCCGC GGTGCCGCTC CGGGCCCCGC GCACAGCCCG
  GCCAGAGGGG CGCCGCCGTC GACCCCCCGC CTCAGCCCGC CGGCCGCGCG CCGCCGCGAG
  CCGCCCCTCT CGCGGGCCGC TGAGGAGAGC CGGAGGGAGC GCGCGCCCCG CGGGCGGCGC
  CGGCGGGGTC TCCGGGCGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss359085538	MGP_WTSI_3_104023904	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs255343985					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359085538	MGP_WTSI_3_104023904	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104127297 () rs orientation: forward

Symbol	Name	Function Class
2010002M09Rik	RIKEN cDNA 2010002M09 gene	622 bp upstream
Cpgi13643	CpG island 13643	within coordinates
Gm66179	predicted gene, 66179	within coordinates
Magi3	membrane associated guanylate kinase, WW and PDZ domain containing 3	mRNA-UTR
Rr397911	regulatory region 397911	376 bp upstream
Rr582475	regulatory region 582475	312 bp distal
Rr582476	regulatory region 582476	112 bp proximal
Rr582477	regulatory region 582477	633 bp proximal
Tssr31043	transcription start site region 31043	890 bp upstream
Tssr34876	transcription start site region 34876	365 bp downstream
Tssr34877	transcription start site region 34877	379 bp downstream