rs255354961 SNP Detail

Summary

• ID
  rs255354961
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101899843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCCCGCC CCGCAGCCTC
  CGCGGGAAGG CTGAGAAATG CCTTCCGCTC AGCCCGGGAA TCTAGAGGTA GCCGCGGCTG
  GCTAGGGGTT AGCCGGAATG GGTCAGGCTG GGGCAGTCCC CACCCCTGCC CTGAGCCTTG
  GGAGAATGCT GGGTGGTGGT GATTCAGCAG TGGGAAGGTC CCAGACCCCT GGGGAGGGTG
  K
  GGAGACAGAG GTGGGGGGAG GGCAGCTGCC GTCAGCACCC CGGGAAAAGA CGTGATCAGC
  AGAGATGCAG GCGGAGCCGC GCGGGCCCCC AAAACAGGAT GTCGTGTCGT GGTTCCGCAC
  CTCGCAGCTC CGCGGGGCCC TGGGGAGGGG GCGGGGCGTG GGAAGACGTG GGGCTCTTCT
  TGTTCCCTGA TCTCGCCCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353660	CHEV_7_109399150	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255354961					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101899843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	within coordinates
Rhog	ras homolog family member G	518 bp upstream
Rr652562	regulatory region 652562	559 bp distal
Rr652563	regulatory region 652563	23 bp distal
Rr652564	regulatory region 652564	285 bp proximal
Tssr2354	transcription start site region 2354	360 bp downstream
Tssr68328	transcription start site region 68328	943 bp downstream
Tssr68329	transcription start site region 68329	922 bp downstream
Tssr68330	transcription start site region 68330	381 bp downstream
Tssr73939	transcription start site region 73939	1262 bp upstream
Tssr73940	transcription start site region 73940	1215 bp upstream
Tssr73941	transcription start site region 73941	1162 bp upstream
Tssr73942	transcription start site region 73942	1077 bp upstream
Tssr73943	transcription start site region 73943	550 bp upstream
Tssr73944	transcription start site region 73944	513 bp upstream
Tssr73945	transcription start site region 73945	498 bp upstream
Tssr73946	transcription start site region 73946	302 bp upstream
Tssr73947	transcription start site region 73947	157 bp upstream
Tssr73948	transcription start site region 73948	121 bp upstream
Tssr73949	transcription start site region 73949	88 bp upstream
Tssr73950	transcription start site region 73950	41 bp upstream