rs255372026 SNP Detail

Summary

• ID
  rs255372026
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:70352426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAGTTCAA TTCCCAGTAA CCACATGGTG GCTCACAACC
  ATCTGTAATA GAATCCAATG CCCTCTTTTG GTGTGTCTGA AGACAACTAC AGTGTACTCA
  Y
  ATATATATAT AAAATAGATA AATATTCCTT TTTTTTCCTT TCTTTTTTTG GTTTTTCCAG
  ACAGGGTTTC TTTGTGTAGC CCTGGCTGTC CTGGAGCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	SEA/GnJ	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375092079	MGP_WTSI_8_72423675	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	C	T	C	T	C	T	T	T	T	T	T	C	T	C	C	T	C	T	C	C	T	T	T	C	C	C	T	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	SEA/GnJ	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255372026					SNP	C	T	C	T	C	T	C	T	T	T	T	T	T	C	T	C	C	T	C	T	C	C	T	T	T	C	C	C	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375092079	MGP_WTSI_8_72423675	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:70352426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20428	CpG island 20428	1619 bp proximal
Ndufa13	NADH:ubiquinone oxidoreductase subunit A13	Intron
Rr400887	regulatory region 400887	1755 bp upstream
Rr664594	regulatory region 664594	520 bp distal
Rr664595	regulatory region 664595	1918 bp proximal
Tssr2594	transcription start site region 2594	1992 bp upstream
Tssr81543	transcription start site region 81543	1358 bp downstream
Tssr81544	transcription start site region 81544	1856 bp downstream
Tssr81545	transcription start site region 81545	1885 bp downstream