rs255373344 SNP Detail

Summary

• ID
  rs255373344
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32421230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCGTTAC CTCTGTGATC
  TTACACAGCC TGTCCTTGGT GTTAAATGCC TTTCTCCCTG TCCATCCTTG CCCCCTGCAG
  CCTCTCCTAC AAGCAACTTC CATGGCCTCT CGGGCCACTG CATGATAACA ATCTCCATTC
  CTCACATGGG ACTTTATTAC ATATACTACT ACCTTAAACT CCCTGAGTGC AGAAAGAGAC
  R
  GGTCTTGGAG TCTTCCGTTT ATATTTTATA GTTTTATGTG TATTTGCATG TTGGAATAAA
  ATCTAAAAGC TGAAAGTAGG GGCCTTACCC GCTAGCTCAT ACACATACAT ACACTCGATG
  TTCCAAATTT GCTGCCCCTG ATCCTACAAC TTACTTCAAA CAGCTCAGGC ATTTCCTTCT
  CTGGCCCAGG AAAAAGCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320697915	CHEV_3_32266003	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255373344					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32421230 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	within coordinates
Cpgi13055	CpG island 13055	722 bp distal
Rr77496	regulatory region 77496	229 bp distal
Rr374783	regulatory region 374783	1145 bp downstream
Tssr28744	transcription start site region 28744	1755 bp downstream
Tssr28745	transcription start site region 28745	1728 bp downstream
Tssr32923	transcription start site region 32923	1926 bp upstream
Tssr32924	transcription start site region 32924	1863 bp upstream
Tssr32925	transcription start site region 32925	1655 bp upstream
Tssr32926	transcription start site region 32926	1459 bp upstream
Tssr32927	transcription start site region 32927	1390 bp upstream
Tssr32928	transcription start site region 32928	1168 bp upstream
Zmat3	zinc finger matrin type 3	1416 bp upstream