rs255393287 SNP Detail

Summary

• ID
  rs255393287
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96139636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATCTATC ACTGAGTCGG
  CCTGGCCCCC GTCCATTGAA TGTTAATAGA TTGCCCAAGT ACAGTAAGTA CCCTCACTGC
  TGTACTTTAA GGTATAAGAA TGAAAAGATT CAGAGTTCTA TAGGTTGTAG TTTCAATTTT
  TTAAAACATG TTTACAAGAC AAGTTAACTC ATACCCTGTA TCATATCATT GTTGGCACAC
  R
  TCTGTATTTT AGTGTATTAT GTGTTAGCAA AAGACAAGTT CGAATAAGAA GAGTTATCTA
  GTCTCTTTCA GTCAGTATTG ATTGGAATGT CAGACAGGTA GTGTCTAAGA TGCTGAGGAT
  ACAGTACTAA AAGCAAAGCA CAAAAGTCTT GCCCTGTTGT CAAGAAATAC ATCCAAAAAT
  GTATTTGGTG GCTCAGTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323107355	CHEV_9_96158002	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255393287					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96139636 () rs orientation: forward

Symbol	Name	Function Class
Rr684927	regulatory region 684927	732 bp proximal
Rr684928	regulatory region 684928	1170 bp proximal
Rr684929	regulatory region 684929	1423 bp proximal
Rr684930	regulatory region 684930	1713 bp proximal
Tfdp2	transcription factor Dp 2	within coordinates
Tssr2975	transcription start site region 2975	1637 bp upstream
Tssr86589	transcription start site region 86589	1114 bp upstream
Tssr86590	transcription start site region 86590	1131 bp upstream
Tssr86591	transcription start site region 86591	1145 bp upstream
Tssr86592	transcription start site region 86592	1208 bp upstream
Tssr86593	transcription start site region 86593	1223 bp upstream
Tssr86594	transcription start site region 86594	1425 bp upstream
Tssr86595	transcription start site region 86595	1663 bp upstream
Tssr86596	transcription start site region 86596	1687 bp upstream