rs255399088 SNP Detail

Summary

• ID
  rs255399088
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:3122578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATCCAATAT TTTCATCTGA TCTCGGTGTA CACCAAACAC
  ACACATGTTG TGCATACATA TGGGAAAGCA AAATACTCAT ACATAAAATA ATTTTCTAGC
  T
  GGGCAGTGAT GGCACATGCC TTTAATCCCA GCACTCAGAA GGCAGAGGCA GGTGGATTTC
  TGAGTTCGAG GCCAGCCTGG TCTACAGAGA GAGTTCCAG                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323546750	CHEV_11_3072581	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255399088					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3122578 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi2457	CpG island 2457			within coordinates
Cpgi2458	CpG island 2458			686 bp proximal
Rr441481	regulatory region 441481			128 bp distal
Rr441482	regulatory region 441482			1296 bp distal
Rr441483	regulatory region 441483			362 bp distal
Rr441484	regulatory region 441484			93 bp proximal
Rr441485	regulatory region 441485			613 bp proximal
Rr441486	regulatory region 441486			1395 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)			Intron
				Noncoding-Transcript-Variant
Tssr106448	transcription start site region 106448			217 bp downstream
Tssr106449	transcription start site region 106449			741 bp downstream