rs255402643 SNP Detail

Summary

• ID
  rs255402643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:31081994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGGACAT AGTCGAGTCC
  GAGTCAACAG TCTTTGTCTG AGGGCAGCAC ACATACTCGG TGCCATGGAA CTGGTCTACC
  CCGCAGGGCA GCAGCATGCC ATAGCTATAT AAGGTCAGCC CCTCAGTCAG ACATGCCTAC
  AAGAAATCCA CAGATCACAT CAGGACATTT TCACAAGCTC CCTCCAGCTC TAGCTTCATC
  Y
  AGAAGAAATC TTAGGTCGTA ATGCATTCTC TTCTGGACAT GTTAACTGTT CTGTCAAGAA
  GTTATCATAC TATTATTTTA AGTAAGAACT TGAAGTCTTT CTTAATTTAT AATTTCATCT
  TAGACAAAAA CAACTAAAAC TTAAGATCTA AGAATCACTT TAAAGAGTTT CAGGAATTAA
  CAAGACAAGA CTATCCAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322889497	CHEV_9_30978283	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255402643					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:31081994 () rs orientation: forward

Symbol	Name	Function Class
Aplp2	amyloid beta precursor-like protein 2	within coordinates
Tssr88636	transcription start site region 88636	1890 bp upstream
Tssr88637	transcription start site region 88637	1856 bp upstream
Tssr88638	transcription start site region 88638	1779 bp upstream
Tssr88639	transcription start site region 88639	174 bp upstream
Tssr88640	transcription start site region 88640	159 bp upstream
Tssr88641	transcription start site region 88641	139 bp upstream
Tssr88642	transcription start site region 88642	116 bp upstream
Tssr88643	transcription start site region 88643	76 bp upstream