rs255420318 SNP Detail

Summary

• ID
  rs255420318
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34354440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCCGGCG GCGGCCGGGG
  TCGAGTCCCG GGGGAGGGGA GGCGCCCGGG CGGCGCCCGA GCTTGCGGCC GCGGAGCGAG
  CGTCTGGCAG GTGAGTGCGG CTGCGCGTGC CGGCGACTCC CACCCGGGGC GGCTGCGCTG
  GGACTCGACC CCAGCCGCCC GGTTCCGCCG CCCTCCGGTC TGCACGCTCC TGACTTGCCC
  V
  GTCTCCGGCC TTCTGCTGGC CACGGGCTCG CAGGTTTCCC TCCCCAGTCC GCGGACGGAG
  GTCGCGACTC CCGCCGCCCT CGCACCTTTC CTTACCTCGC AGGCAGCCTC GCCCTTACTA
  GCAGTCTTCT GTCCGCTCTA GGTGCGTGGG TCGTCCAGCC CATTTCTTTT CGCGTTCAAC
  CTTTAAAAAA ACAAAAAACC                                            
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400234944	MGP_WTSI_18_34381041	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255420318					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400234944	MGP_WTSI_18_34381041	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34354440 () rs orientation: forward

Symbol	Name	Function Class
Apc	APC, WNT signaling pathway regulator	within coordinates
Cpgi9813	CpG island 9813	within coordinates
Rr370354	regulatory region 370354	486 bp downstream
Tssr150444	transcription start site region 150444	456 bp downstream
Tssr150445	transcription start site region 150445	411 bp downstream
Tssr150446	transcription start site region 150446	367 bp downstream
Tssr150447	transcription start site region 150447	267 bp downstream
Tssr152786	transcription start site region 152786	246 bp downstream