rs255429731 SNP Detail

Summary

• ID
  rs255429731
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41443421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAGTTAT CCTGTCCCTC
  ATCCTTCAGC AAGTGCAGGC CACTGGGTCC TTTACTTAAT AAACAAGAGG ATGGGGGGAG
  TTGGACATGT GGATCTGCCT CTTTATACCA CGTGACTACC TAGCAAAAAG ACAAGAAGGA
  GTCTTATTTA AGACAGATAA AACAAAAATA AAACATAGAA ACAAAAAGCA CCCATCCCCC
  M
  CCACACACAC ACCAAAAACA AAAACAAACA AACAAACAAA CAAACAAAAA AGCAAAAACT
  AAAACAAAAA ACCAACAATG GAAAAAGATA GTCTGTTTAC ATCCAAATTC ATCTTTGCCC
  ACAGCAGTTT TCGAAGTCCT TATCATGTTT AAAGGGCTGG AATGAAAATA ATTTTATCCT
  TTCCCCTCTT AAATGTCACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322926780	CHEV_9_41340208	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255429731					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41443421 () rs orientation: forward

Symbol	Name	Function Class
Gm48742	predicted gene, 48742	38 bp upstream
Mir100	microRNA 100	621 bp downstream
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677056	regulatory region 677056	230 bp proximal
Rr677057	regulatory region 677057	731 bp proximal
Tssr84510	transcription start site region 84510	626 bp downstream
Tssr84511	transcription start site region 84511	104 bp downstream