rs255454417 SNP Detail

Summary

• ID
  rs255454417
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:121849631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCGAGGGC GGATCCCTCC
  TGGCCCCCTC CACGGCCCTA GTTCGACCCC GGGGAGAGCG AACGCGGCCC AGCGCTGCGC
  CCCGCTCCTC ACGTGTCCCT GATCGGCCCC CCGGGCCGTC TCACGTTCGA CTTCCGCCTG
  ACCCTTCCGA CTTCCGGTAA AGAGTCCCCC CCCCCACCCC CGACACCTCC CCCGCCCCGG
  G
  TCTGTTTCGC ATCTCCGCGC CCTCCAGGCC CGCGTCAACC CCGTCCGCGT CCGCCAGCCC
  GGGTCCCATG CGTTCGTCCA CCGCCGCCGC TCAGCGGCCC GCGGCGGGGG ACCCCGAGCC
  GCGCCGCCCG GCGGGCTGGG CCGCGCGGCG CTCGCTCCCG CGGACGGCGC GGCGCGGCGG
  GCGGGGCGGC GCGGTGGCGT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
ss366502169	MGP_WTSI_5_122161577	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J	WSB/EiJ
rs255454417					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366502169	MGP_WTSI_5_122161577	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121849631 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700064N11Rik	RIKEN cDNA 1700064N11 gene			within coordinates
Atxn2	ataxin 2			Intron
				Noncoding-Transcript-Variant
Cpgi16531	CpG island 16531			within coordinates
Rr619651	regulatory region 619651			114 bp distal
Rr619652	regulatory region 619652			within coordinates
Rr619653	regulatory region 619653			91 bp proximal
Rr619654	regulatory region 619654			1441 bp proximal
Rr619655	regulatory region 619655			1899 bp proximal
Tssr48591	transcription start site region 48591			217 bp upstream
Tssr48592	transcription start site region 48592			340 bp upstream
Tssr48593	transcription start site region 48593			471 bp upstream
Tssr48594	transcription start site region 48594			500 bp upstream
Tssr48595	transcription start site region 48595			899 bp upstream
Tssr53053	transcription start site region 53053			89 bp upstream