rs255460153 SNP Detail

Summary

• ID
  rs255460153
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149978968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAAATAA ATAAATAAAT
  TATTAGTCAT CGGTGGCATT GGGAAGTGAA CCTTAGAAGT TTGTGCTTGC CAGGCACTGG
  TCTCTGCTAT TGAGGCAGAA GAGGTCCAGC CTTTACACAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACATACAA AATCCCCTTC TATGCTTCTT TAAACAATGT
  W
  AAATTACTAT TATGGTTATA ATGAAGCAAG TGGCATATTT AATATAGGAT ACTAATACTA
  TTCAACATAA AGAAATATAC AGACTTGTAG CTCTGGTAGA CAAATTATTT TAGAATTTTG
  TGGCTATGAA AAAGTCACTT ATTGAGCTAG ATTGGTGATT AAGAACAGTT GTTGCTTTTG
  CTTAAGTTCT TAACACCTAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351888740	MGP_WTSI_1_151950347	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255460153					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351888740	MGP_WTSI_1_151950347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149978968 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	1033 bp proximal
Rr24983	regulatory region 24983	1065 bp proximal
Rr31002	regulatory region 31002	1568 bp distal
Tssr242	transcription start site region 242	412 bp downstream
Tssr9227	transcription start site region 9227	1944 bp downstream
Tssr9228	transcription start site region 9228	1904 bp downstream
Tssr9229	transcription start site region 9229	1891 bp downstream
Tssr9230	transcription start site region 9230	1104 bp downstream
Tssr9231	transcription start site region 9231	1071 bp downstream
Tssr9232	transcription start site region 9232	1028 bp downstream
Tssr9233	transcription start site region 9233	572 bp downstream
Tssr9234	transcription start site region 9234	543 bp downstream
Tssr9235	transcription start site region 9235	512 bp downstream
Tssr9236	transcription start site region 9236	487 bp downstream
Tssr9237	transcription start site region 9237	455 bp downstream
Tssr9238	transcription start site region 9238	424 bp downstream
Tssr9239	transcription start site region 9239	390 bp downstream
Tssr9240	transcription start site region 9240	376 bp downstream
Tssr9241	transcription start site region 9241	346 bp downstream
Tssr9242	transcription start site region 9242	330 bp downstream
Tssr9243	transcription start site region 9243	203 bp downstream
Tssr9244	transcription start site region 9244	152 bp downstream
Tssr9245	transcription start site region 9245	116 bp downstream
Tssr9246	transcription start site region 9246	97 bp downstream
Tssr9247	transcription start site region 9247	28 bp upstream
Tssr9248	transcription start site region 9248	448 bp upstream
Tssr9249	transcription start site region 9249	475 bp upstream
Tssr9250	transcription start site region 9250	643 bp upstream
Tssr9251	transcription start site region 9251	689 bp upstream
Tssr9252	transcription start site region 9252	744 bp upstream
Tssr9253	transcription start site region 9253	774 bp upstream
Tssr9254	transcription start site region 9254	801 bp upstream
Tssr9255	transcription start site region 9255	820 bp upstream
Tssr9256	transcription start site region 9256	1060 bp upstream
Tssr9257	transcription start site region 9257	1084 bp upstream
Tssr9258	transcription start site region 9258	1107 bp upstream
Tssr9259	transcription start site region 9259	1132 bp upstream
Tssr9260	transcription start site region 9260	1187 bp upstream
Tssr9261	transcription start site region 9261	1242 bp upstream
Tssr9262	transcription start site region 9262	1250 bp upstream
Tssr9263	transcription start site region 9263	1272 bp upstream
Tssr9264	transcription start site region 9264	1317 bp upstream
Tssr9265	transcription start site region 9265	1348 bp upstream
Tssr9266	transcription start site region 9266	1437 bp upstream
Tssr9267	transcription start site region 9267	1728 bp upstream
Tssr9268	transcription start site region 9268	1784 bp upstream
Tssr14130	transcription start site region 14130	1955 bp upstream
Tssr14131	transcription start site region 14131	1899 bp upstream