rs255476624 SNP Detail

Summary

• ID
  rs255476624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:95249983 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCTCACTTA CAAAAGTAAC TCAAGATACT
  TCGTTTAATA ACTTTGAACA ATGTGCCCCC CTCCGTTTCA GCCGACAGCT CCCCTCTCGC
  CACCCCCCCC CCCCGCAACA AAAAAATATT ACCGGGAAAC TTTCCCAAGG AAAGCCCAGG
  R
  CCGAAAGGAA AGACTGGAAC TTTTTCTCCT CTCCCAAGAT CTACTGCTAC AAAAGTTGTC
  TTGCCTCAAA GGTAAGTTTT CAGAAGCCAG ATTTTTTAAG ACTCAAATTG TTTTCGAGCT
  ATTGGGAGAA AATATAAATT TCTCTTCTTT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323413489	CHEV_10_94876755	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255476624					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:95249983 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2139	CpG island 2139	185 bp proximal
Gm33230	predicted gene, 33230	within coordinates
Rr225467	regulatory region 225467	within coordinates
Rr385140	regulatory region 385140	717 bp upstream
Socs2	suppressor of cytokine signaling 2	within coordinates
Tssr95358	transcription start site region 95358	1470 bp upstream
Tssr99030	transcription start site region 99030	520 bp upstream
Tssr99031	transcription start site region 99031	1073 bp downstream
Tssr99032	transcription start site region 99032	1164 bp downstream
Tssr99033	transcription start site region 99033	1344 bp downstream
Tssr99034	transcription start site region 99034	1376 bp downstream
Tssr99035	transcription start site region 99035	1852 bp downstream
Tssr99036	transcription start site region 99036	1886 bp downstream