rs255479739 SNP Detail

Summary

• ID
  rs255479739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69558935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCCAAGT TGCTACGTTC
  CTGAAAAGGG CACACAGTCA GCCCTTTGGA GAGGGAATCA CCTTGGACTA ACTTAACTTG
  TCTTCCTTTC TTTCCCTGAA AGCATCTACT CACCAACAGG TCAGTGGTAA TTAATACTCT
  GCTAGAGCCA GACCGGAACT CCCTCATGAT CACATCTCGT TCCTTTTGGT CCATATCTCC
  R
  TGCTGGAAAA CAAAGAGGTA GAAGCATTTG GCACAAGGCT CCCAACACAG ACAGACACAC
  AGAGACACAT AGCCATTAAA ACTCACCATG GCAGAAACAG TGAAATCTCG GGCATGCATC
  TTCTCGGTGA GCCAGTCCAC CTTCCTTCTG GTGTTGATAA AGATGACTGC CTGGGTGATG
  GTCAGCGTCT CATACAAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383788507	MGP_WTSI_11_69481611	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255479739					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383788507	MGP_WTSI_11_69481611	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69558935 () rs orientation: forward

Symbol	Name	Function Class
Cd68	CD68 antigen	1956 bp upstream
Eif4a1	eukaryotic translation initiation factor 4A1	within coordinates
Gm22988	predicted gene, 22988	1526 bp downstream
Gm24029	predicted gene, 24029	133 bp upstream
Gm25835	predicted gene, 25835	743 bp downstream
Gm73992	predicted gene, 73992	within coordinates
Rr450061	regulatory region 450061	1466 bp distal
Tssr102516	transcription start site region 102516	1616 bp downstream
Tssr102517	transcription start site region 102517	1594 bp downstream
Tssr108762	transcription start site region 108762	1960 bp upstream
Tssr108763	transcription start site region 108763	1940 bp upstream
Tssr108764	transcription start site region 108764	854 bp upstream
Tssr108765	transcription start site region 108765	723 bp upstream
Tssr108766	transcription start site region 108766	882 bp downstream