rs255482255 SNP Detail

Summary

• ID
  rs255482255
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149979330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAACAGTTG TTGCTTTTGC
  TTAAGTTCTT AACACCTACA TGACAGTTCA CAACCACCTA TAACTCCAGT CAGTTCTAGG
  AGATTCCATG TTTTGTAACA TTTTAGGGCA CCAGACAAGC ACATGACATA CATACATACA
  TACATACATA GAGGCAAATT CTCATACATA TAAAAATAAA ATAAATCTTA AGAAAATCAC
  K
  TGGTGAATTT TAAAGACAAC TAAATCATCA ATATTGAATA AGAAATTATA GTAAAAAATC
  AGTAAATTGA ACTTTCTCCA TACTTAATTT TCTAGGTGGA CTTAAATCAC ATTTATGGTG
  AAACTCTGGA CAGACAACAT AAACTGCGCC TTTTCAAGGA TGGAAAATTG AAATATCAGG
  TATTTTCCTT ATGGTTTAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351888746	MGP_WTSI_1_151950709	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255482255					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351888746	MGP_WTSI_1_151950709	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149979330 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	671 bp proximal
Rr24983	regulatory region 24983	703 bp proximal
Rr31002	regulatory region 31002	1930 bp distal
Tssr242	transcription start site region 242	774 bp downstream
Tssr9230	transcription start site region 9230	1466 bp downstream
Tssr9231	transcription start site region 9231	1433 bp downstream
Tssr9232	transcription start site region 9232	1390 bp downstream
Tssr9233	transcription start site region 9233	934 bp downstream
Tssr9234	transcription start site region 9234	905 bp downstream
Tssr9235	transcription start site region 9235	874 bp downstream
Tssr9236	transcription start site region 9236	849 bp downstream
Tssr9237	transcription start site region 9237	817 bp downstream
Tssr9238	transcription start site region 9238	786 bp downstream
Tssr9239	transcription start site region 9239	752 bp downstream
Tssr9240	transcription start site region 9240	738 bp downstream
Tssr9241	transcription start site region 9241	708 bp downstream
Tssr9242	transcription start site region 9242	692 bp downstream
Tssr9243	transcription start site region 9243	565 bp downstream
Tssr9244	transcription start site region 9244	514 bp downstream
Tssr9245	transcription start site region 9245	478 bp downstream
Tssr9246	transcription start site region 9246	459 bp downstream
Tssr9247	transcription start site region 9247	324 bp downstream
Tssr9248	transcription start site region 9248	86 bp upstream
Tssr9249	transcription start site region 9249	113 bp upstream
Tssr9250	transcription start site region 9250	281 bp upstream
Tssr9251	transcription start site region 9251	327 bp upstream
Tssr9252	transcription start site region 9252	382 bp upstream
Tssr9253	transcription start site region 9253	412 bp upstream
Tssr9254	transcription start site region 9254	439 bp upstream
Tssr9255	transcription start site region 9255	458 bp upstream
Tssr9256	transcription start site region 9256	698 bp upstream
Tssr9257	transcription start site region 9257	722 bp upstream
Tssr9258	transcription start site region 9258	745 bp upstream
Tssr9259	transcription start site region 9259	770 bp upstream
Tssr9260	transcription start site region 9260	825 bp upstream
Tssr9261	transcription start site region 9261	880 bp upstream
Tssr9262	transcription start site region 9262	888 bp upstream
Tssr9263	transcription start site region 9263	910 bp upstream
Tssr9264	transcription start site region 9264	955 bp upstream
Tssr9265	transcription start site region 9265	986 bp upstream
Tssr9266	transcription start site region 9266	1075 bp upstream
Tssr9267	transcription start site region 9267	1366 bp upstream
Tssr9268	transcription start site region 9268	1422 bp upstream
Tssr9269	transcription start site region 9269	1805 bp upstream
Tssr9270	transcription start site region 9270	1845 bp upstream
Tssr9271	transcription start site region 9271	1869 bp upstream
Tssr9272	transcription start site region 9272	1899 bp upstream
Tssr9273	transcription start site region 9273	1951 bp upstream
Tssr9274	transcription start site region 9274	1969 bp upstream
Tssr9275	transcription start site region 9275	1996 bp upstream