rs255488370 SNP Detail

Summary

• ID
  rs255488370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69570945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAATTAAG GCTTAAGATC ATTTCACGGA TATTCTGGAA
  GCTTTGCTCT GCTTTTCTTA GGCTCACCAT GGCAACAAAC TCCTGGTGCT CCAGGCTCAT
  Y
  ACCCTTCCCA TTTCCCACCT TACCCGAGTC AGGGTCCAGA GGAGACTTTG GGGTCCACCT
  TAGTCCATCT TCCTCCATGG GGGGCCCAGA GGGCACTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323731035	CHEV_11_69493621	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255488370					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69570945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	1148 bp proximal
Gm73989	predicted gene, 73989	1610 bp downstream
Rr450067	regulatory region 450067	1006 bp proximal
Rr450068	regulatory region 450068	1717 bp proximal
Rr450069	regulatory region 450069	1955 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	within coordinates
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	1913 bp upstream
Tssr108773	transcription start site region 108773	522 bp downstream
Tssr108774	transcription start site region 108774	1674 bp downstream
Tssr108775	transcription start site region 108775	1703 bp downstream
Tssr108776	transcription start site region 108776	1751 bp downstream
Tssr108777	transcription start site region 108777	1784 bp downstream
Tssr108778	transcription start site region 108778	1840 bp downstream
Tssr108779	transcription start site region 108779	1875 bp downstream
Tssr108780	transcription start site region 108780	1951 bp downstream