rs255493115 SNP Detail

Summary

• ID
  rs255493115
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153063185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GATGTGGCT GGCTTTGTAC AGAACATGGA
  GTCTGAACTA GATACCTAGT TCTAACCAGG AAGTAGACAA AGCATTGAAG AGCAACAGAG
  GCAAGATAGG GTACTGCAGA CAAGCCGACA TCTCTAAAAT CTAGCGCAAA ATGAGCAACA
  S
  AATGGATATT CTAATTTTCT TAACCTAGAC TCAACTCTCT TCTGCTCTGT CCAAATAATG
  TGGAGATTCT TCTCACTCAG AATCAGTGCC CAGCTACTGC TAACACTTCA GTTCCTTGAG
  AGCAGGCATC TATAATTTTT TTCTTCCAGT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320071247	CHEV_1_155034569	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255493115					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153063185 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	972 bp distal
Lamc2	laminin, gamma 2	992 bp upstream
Rr13130	regulatory region 13130	within coordinates
Rr25076	regulatory region 25076	807 bp proximal
Rr28719	regulatory region 28719	784 bp distal
Tssr14250	transcription start site region 14250	1383 bp upstream
Tssr14251	transcription start site region 14251	1347 bp upstream
Tssr14252	transcription start site region 14252	1317 bp upstream
Tssr14253	transcription start site region 14253	1303 bp upstream
Tssr14254	transcription start site region 14254	1284 bp upstream