rs255506150 SNP Detail

Summary

• ID
  rs255506150
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45433040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACATCATA GCCGGCTTCT
  TCCAGCAGTC CTGACTCCTG GCACACCGCT GAGCCAACCA CATTCAAATA CTCAAAAGTA
  AACATTTGTT GAGTGAACTT ATGAACAAAC GGCGGCGTCA ATCTTCCCGC CCTCATTACT
  GGTAGCCAGT GCCCGCCCGG CCTGTCACCC TCAGGCTAAA ACCCCCGCAG GTGGCGCAAC
  S
  GACAACCTAA GCCTCCTCGC TAGACCAACA AGGACTGCAT TTCCCAGAAG ACTCTGCGCG
  GGCCCACGAC TCCCTGTGAG CTTCTCTTTC TCCAGGCTCT GGTTCTTCAG TCAGGGGGTC
  CGCTTTGCGT GCTCACTCCC CGGTCACTGC AATCCCATTC CCTGTACCTT TCTGAACTTC
  CATTCCACGA TGATCCTGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371184846	MGP_WTSI_7_53038986	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255506150					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371184846	MGP_WTSI_7_53038986	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45433040 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19088	CpG island 19088	within coordinates
Cpgi19089	CpG island 19089	1767 bp proximal
Lmtk3	lemur tyrosine kinase 3	mRNA-UTR
Rr646575	regulatory region 646575	within coordinates
Rr646576	regulatory region 646576	342 bp proximal
Rr646577	regulatory region 646577	1043 bp proximal
Tssr66636	transcription start site region 66636	70 bp upstream
Tssr66637	transcription start site region 66637	267 bp upstream
Tssr66638	transcription start site region 66638	1715 bp upstream
Tssr66639	transcription start site region 66639	1954 bp upstream
Tssr72472	transcription start site region 72472	1410 bp downstream