rs255512671 SNP Detail

Summary

• ID
  rs255512671
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:60727814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGATTTA CTGAGTAGAG
  AACAAAGGTA TATTGTTTTA GACTCTTGGC TGTTGCATCT ATAAGAACAA TTGGAGTATA
  AAAAATCTGA TGAATAATAT GTTTATTCAA CAGAATTCAG CCTTAGAACT GAGTTTTAGG
  TATAAATATT CTCCTGTCTA CTTTGTGTGT TTGTTCATAG TGTATTTGTG TGTGGGGGGG
  T
  GGGGTGGGGG GGGGGCAGGA CACACATGCA TGCCTGAAAA GGCTAAAGAT TGACTTGGGT
  GTCTTCCTGT CCCTCTTCAT TTGCTGATGT AAGGTCTTTG GCCAAGGCTT TCCCATCAGC
  TAGCCAGCTC ACCCTAGGAC TCTGTAGTCT CTAGACAGGC CATCATCACA CCTACCTGAC
  TGGGTTCTAA TGCTTGCCTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss377761293	MGP_WTSI_9_60668339	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	KK/HlJ	LP/J	MA/MyJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs255512671					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377761293	MGP_WTSI_9_60668339	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:60727814 () rs orientation: forward

Symbol	Name	Function Class
Gm9869	predicted gene 9869	1020 bp downstream
Rr196167	regulatory region 196167	614 bp distal
Rr196168	regulatory region 196168	1787 bp proximal
Rr201055	regulatory region 201055	1814 bp distal
Rr209918	regulatory region 209918	528 bp distal
Rr209919	regulatory region 209919	387 bp proximal
Rr209920	regulatory region 209920	1587 bp proximal
Rr209921	regulatory region 209921	1924 bp proximal
Rr383461	regulatory region 383461	388 bp upstream
Uaca	uveal autoantigen with coiled-coil domains and ankyrin repeats	within coordinates