rs255514146 SNP Detail

Summary

• ID
  rs255514146
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:141464256 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGTAGCA GGGTGGGGGC
  GGGGGTGGGG TGGGGTGGGG TGGGGAGCAG AGAGGAAGCA GGGCAGGAGG TGGGAAGCGA
  GGACGAAGTG GGTAGGCTGT GGAGGGAAGG CTGCGAGGCG GGGCAGTGGT GGCTTGAAGA
  CGTGTGTATG TGTGTGTGTG TGTGTGTGTA TGTGTGTGTG TAGGGAGGGA GTGAAGTGGA
  T
  CGGAGGAGTG TGTGTGTGTG TGTGTGTGTG TAGGGAGGGG GTGAAGTGGA CGGGAGGAGG
  GCCGAAGGTG GAGGGAGTTG GCGACGAGGG GGTGGAGAGA GGGAGGGGAA ACCGGAGGAA
  GCGAGCGGCG GCTGCCGGGG GAGGAAGGCA AGGAGGAGGA GCCGGAGCGG CGGCGGTGGC
  GGCTGCTGCT GCTGCTGCGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss404780372	MGP_WTSI_X_139115803	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs255514146					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404780372	MGP_WTSI_X_139115803	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:141464256 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22978	CpG island 22978	within coordinates
Rr694098	regulatory region 694098	1079 bp distal
Rr694099	regulatory region 694099	721 bp distal
Rr694100	regulatory region 694100	within coordinates
Tmem164	transmembrane protein 164	146 bp upstream
Tssr162238	transcription start site region 162238	419 bp downstream
Tssr162239	transcription start site region 162239	138 bp upstream
Tssr162240	transcription start site region 162240	591 bp upstream
Tssr162241	transcription start site region 162241	623 bp upstream