rs255520672 SNP Detail

Summary

• ID
  rs255520672
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36054949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAT CTGGAGGGGC GGGGCCAGGT
  W
  TTTTTTTTTT TCTTTTTTTT TTTTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ
ss916034436	MGP_WTSI_3_36000800	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ
rs255520672					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss916034436	MGP_WTSI_3_36000800	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36054949 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13078	CpG island 13078	41 bp distal
Mccc1	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	122 bp upstream
Mccc1os	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand	within coordinates
Rr397641	regulatory region 397641	within coordinates
Rr575296	regulatory region 575296	877 bp distal
Rr575297	regulatory region 575297	355 bp distal
Rr575298	regulatory region 575298	within coordinates
Rr575299	regulatory region 575299	9 bp distal
Tssr28858	transcription start site region 28858	360 bp downstream
Tssr33012	transcription start site region 33012	192 bp upstream
Tssr33013	transcription start site region 33013	153 bp upstream
Tssr33014	transcription start site region 33014	140 bp upstream
Tssr33015	transcription start site region 33015	118 bp upstream