rs255521578 SNP Detail

Summary

• ID
  rs255521578
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83484366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGAGTCGC AGGACAGTCA
  GGGCTACACA AAGAAACCCT GTCTTGAAAA ACAGAACAAC AAAAATCTTG TTATACTTAT
  TTATTTTGAT ATTTTGAGAC AAGGTCTCAT GTAGTGCAGT TGGTCCTCCT GCCTCCCCGT
  CCCAAGTGGT GAGCCTACAA TGTGTGTTCC AGCATGCTCA TTACGTATCA TTTTACTTAC
  K
  CATTAATGGC GCACTTGTAG AGGTCAGGAC GACTTATAAG AGTCTGCTCA AACTCAGGCT
  ATCAGTCTTG GCAGCTAGTG TTTTTACCTG CTGAGCCGTC TCACTGGCCC TAAGATAAAT
  GCCTTCTTCC TCCATACTTT GGGACTTTAT TGCCTACAGG AAGAGACTGG ACTGTTTTAA
  GCAGGAAGGG AACAATCCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369032989	MGP_WTSI_6_83457378	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255521578					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369032989	MGP_WTSI_6_83457378	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83484366 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17605	CpG island 17605	within coordinates
Dguok	deoxyguanosine kinase	479 bp upstream
Rr399724	regulatory region 399724	206 bp downstream
Tssr1908	transcription start site region 1908	278 bp downstream
Tssr61663	transcription start site region 61663	1124 bp upstream
Tssr61664	transcription start site region 61664	561 bp upstream
Tssr61665	transcription start site region 61665	549 bp upstream
Tssr61666	transcription start site region 61666	534 bp upstream
Tssr61667	transcription start site region 61667	508 bp upstream
Tssr61668	transcription start site region 61668	490 bp upstream
Tssr61669	transcription start site region 61669	457 bp upstream