rs255541778 SNP Detail

Summary

• ID
  rs255541778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:95475387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGGGAA GTTGAGGCAC
  TGGGAACTGA AAGCAGCTCG TCACAGTCAT CCAAGCTCAG GAAACAGAGG GATGGATGCA
  AATGCTCAGC TTGCTCTCTC TACTTTATAC CATCCAGGAT CTACCGCCCA GGGAATAGCC
  CCACCACAAT TAAGATGGGT TTTCTCTCAT CACTTAAAAT AAGATAATCC CCACAGGGAC
  R
  CCCAGAGGTC TCCCTAAGGG ATCCTAGATA CTGCCAATTG GCAGTTACCA CTACCATCAC
  GGGCAAACCT ATTTCTCCAC CAGATGCTCT GGGACTCTCA AAGAGGCCTG GGAGGGATCT
  CTACAAAGTC ACAGTCCAGC CCCGACCCTT GACATATTTT ACTCCTTCTT TTATTCAGCC
  AAATTTCTTC ACATCTGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375648248	MGP_WTSI_8_97272659	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	G	A	A	G	G	A	A	G	G	G	G	A	A	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	A	A	A	A	G	A	G	G	G	G	A	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255541778					SNP	A	A	A	G	A	A	G	G	A	A	G	G	G	G	A	A	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	G	G	G	A	A	A	A	G	A	G	G	G	G	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375648248	MGP_WTSI_8_97272659	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:95475387 () rs orientation: forward

Symbol	Name	Function Class
Ccl22	C-C motif chemokine ligand 22	within coordinates
Tssr2654	transcription start site region 2654	1170 bp upstream
Tssr78906	transcription start site region 78906	1809 bp downstream
Tssr78907	transcription start site region 78907	515 bp upstream
Tssr78908	transcription start site region 78908	1087 bp upstream
Tssr78909	transcription start site region 78909	1130 bp upstream
Tssr78910	transcription start site region 78910	1247 bp upstream
Tssr78911	transcription start site region 78911	1262 bp upstream
Tssr78912	transcription start site region 78912	1509 bp upstream
Tssr78913	transcription start site region 78913	1689 bp upstream