rs255547083 SNP Detail

Summary

• ID
  rs255547083
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30122711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTGGTGG TGCTTCCGAG
  GAGCCCGGTG TCTCCGGAGA AGATAGATGC TTCAGAGAAG TGCTAGCCTC CCCACTTCCT
  CAGTTTCCAC TACGGTGGTG GAAAGTTGGT GCGGAGGAAA AGCGTGGAGG AAAAGGAAGG
  AAATGGCGGA GGCGGGGCCC TGCACTCAAC ATCTTCTGTT GGCTTTGTAG TTCTCCAGCT
  Y
  GCTCGAAGGA AAGGAGGGCG CCCACATGCA CTCCCAGCCA CCCACCGCTG CCACCGAGGC
  TGCATTCGGG TGACTTAAAC ATTCCTGATG ACTTCCTTCT GTCTTCCCAC ACACAGTGAG
  TCGGCCTGAG CGTAGTCACT GCCCAACACA GACGGTAAAG AAGCTTCTGG AAGAACAGAG
  GCGCCGACAG CAGCAGCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370906882	MGP_WTSI_7_31208305	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255547083					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370906882	MGP_WTSI_7_31208305	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30122711 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18799	CpG island 18799	478 bp distal
Cpgi18800	CpG island 18800	within coordinates
Nfkbid	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	within coordinates
Rr400239	regulatory region 400239	1432 bp downstream
Rr400240	regulatory region 400240	853 bp downstream
Rr644814	regulatory region 644814	1544 bp distal
Rr644815	regulatory region 644815	870 bp distal
Rr644816	regulatory region 644816	1 bp distal
Tssr2184	transcription start site region 2184	58 bp upstream
Tssr65714	transcription start site region 65714	1544 bp downstream
Tssr65715	transcription start site region 65715	991 bp downstream
Tssr65716	transcription start site region 65716	855 bp downstream
Tssr65717	transcription start site region 65717	842 bp downstream
Tssr65718	transcription start site region 65718	816 bp downstream
Tssr65719	transcription start site region 65719	within coordinates
Tssr65720	transcription start site region 65720	19 bp upstream
Tssr65721	transcription start site region 65721	76 bp upstream
Tssr65722	transcription start site region 65722	95 bp upstream
Tssr65723	transcription start site region 65723	126 bp upstream
Tssr65724	transcription start site region 65724	142 bp upstream
Tssr65725	transcription start site region 65725	314 bp upstream
Tssr65726	transcription start site region 65726	321 bp upstream
Tssr65727	transcription start site region 65727	339 bp upstream
Tssr65728	transcription start site region 65728	634 bp upstream
Tssr65729	transcription start site region 65729	952 bp upstream
Tssr65730	transcription start site region 65730	1000 bp upstream
Tssr65731	transcription start site region 65731	1026 bp upstream
Tssr65732	transcription start site region 65732	1064 bp upstream
Tssr65733	transcription start site region 65733	1092 bp upstream
Tssr65734	transcription start site region 65734	1133 bp upstream
Tssr65735	transcription start site region 65735	1932 bp upstream
Tssr65736	transcription start site region 65736	1951 bp upstream
Tssr65737	transcription start site region 65737	1985 bp upstream
Tssr71745	transcription start site region 71745	1650 bp upstream