rs255548380 SNP Detail

Summary

• ID
  rs255548380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76301828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCGTTA AGGATAGCCT
  CACTCTTGCT AGGAGGGTAA CAGAGAGGCA GTTATCCCAG GTGTTCCCCA CCACACTCTG
  AAAGCTAGGG CCTATGACAA CGTGGAAAGC CGCATTGCCT GCTCCAGGTC AGTAGCCGGA
  ATCAGCTTAA GGCCTCCAAG ATCCTGCCCG GAGAAGCCAG TACGATCCAA AATCACACTG
  Y
  TTTGCAGGAC TCTGTCGCCG CAACCTAGGT CACGCAAACT TGCTCAGACA GGCCCATTCC
  TGCCCGGACT CCGCCCAGTT CCACCGCGCC CCCTACACAC TATCTCTGAT TGGCTAAAAG
  CGAGGCGGGA AGCTCCCGGC TCATCAGAGG CGGGCTCCAC ACAGGCTCTT TCCGCAGCCA
  GTCATTGCCG CCAACCAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104762	CHEV_12_77356041	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255548380					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76301828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	within coordinates
Gm47525	predicted gene, 47525	within coordinates
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	244 bp upstream
Rr403350	regulatory region 403350	within coordinates
Tssr113934	transcription start site region 113934	155 bp upstream
Tssr113935	transcription start site region 113935	190 bp upstream
Tssr113936	transcription start site region 113936	236 bp upstream
Tssr113937	transcription start site region 113937	278 bp upstream
Tssr113938	transcription start site region 113938	294 bp upstream
Tssr113939	transcription start site region 113939	317 bp upstream
Tssr113940	transcription start site region 113940	399 bp upstream
Tssr113941	transcription start site region 113941	429 bp upstream
Tssr116711	transcription start site region 116711	within coordinates
Tssr116712	transcription start site region 116712	18 bp downstream