rs255551552 SNP Detail

Summary

• ID
  rs255551552
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110725818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGCTTAG CCCTTCCTGG
  GGGACACAAA AACAGGTCCT CTGAGCTCAG ACTAGCAAAG CATTCCACCT CGTGTCTCCA
  ATTTCAGGCA TCTGTGGCCC CTCAAGGACC TCAAGCTGAC AAGCAATCAG GTGAGAGGGC
  TGTGTTCCGC TTGCCTGGGA GGAGGGGCCT GTGGTCCTGG AAGGAGGAGG GGCCTGTGGT
  Y
  CGGGAAGGAG GAGGGGCCTG TGGTCCTAGA AGGAGGGGCC TGTGGTCCTA GGAGGAGGAG
  GGTCCTGTGG TACTGGGAGG AGGGGTGTGT GGTCTTGGAG CATCGAAGTC TTGACTGCCT
  AGGGAGAGAC CAGAGAGGAA GGAGAGACCC AGGCTTCCTT CCTGTCACAG GTGACTCCCA
  CGTGACCAGG CTCCCGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
ss378912640	MGP_WTSI_9_110799254	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	C	C	C	T	T	T	T	T	T	T	T	T	C	T	C	C	T	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	LG/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J
rs255551552					SNP	C	T	C	C	C	T	T	T	T	T	T	T	T	T	C	T	C	C	T	C	C	T	C	C	C	T	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378912640	MGP_WTSI_9_110799254	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110725818 () rs orientation: forward

Symbol	Name	Function Class
Als2cl	ALS2 C-terminal like	within coordinates
Gm43127	predicted gene 43127	851 bp upstream
Rr192781	regulatory region 192781	818 bp distal
Rr205816	regulatory region 205816	817 bp distal
Rr205817	regulatory region 205817	within coordinates
Tssr87434	transcription start site region 87434	1000 bp downstream
Tssr87435	transcription start site region 87435	969 bp downstream
Tssr87436	transcription start site region 87436	198 bp upstream