rs255556403 SNP Detail

Summary

• ID
  rs255556403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142129647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACAGGTGG GTACTGGGGC
  AGCATTGCCA AAGAGGTTTA CACACTCGCT GTATACATTC ATACGGAGAG ACTCAAAGCT
  ATCTCCGGGA CTCCAAACCA GTGCAATCGA CTTAGTGCAA ATTCAAAAGG GGGTAAATGG
  GGAAACAGAG TCACGGGTGC TTTGAGTCTC TCAAGCAAGG AAGGAACAAA AGGAAAGAAA
  Y
  AGAATTACAG GAAAGGAGGA AGAAGAAAAA GACAGGAGGG AGATGATGAA GTCATCCCGG
  GGTAGAGGCT TGGCTCCAGG ATGATGTGGG TGGTGGTCTC CCGGGTCAGG CAGAGTTGGC
  CATGAAGATG GATTCTCAGG GGTGGGTGGG TGCTATGAGT CTGCTCTTTC AAAATGTTGA
  CACCATCTGT TCTTTCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373453159	MGP_WTSI_7_149761815	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255556403					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373453159	MGP_WTSI_7_149761815	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142129647 () rs orientation: forward

Symbol	Name	Function Class
Gm56420	predicted gene, 56420	943 bp upstream
Gm56421	predicted gene, 56421	1939 bp upstream
H19	H19, imprinted maternally expressed transcript	within coordinates
Mir675	microRNA 675	1154 bp downstream
Rr1042	regulatory region 1042	1998 bp distal
Tssr2460	transcription start site region 2460	1333 bp upstream
Tssr70212	transcription start site region 70212	376 bp downstream
Tssr70213	transcription start site region 70213	79 bp upstream
Tssr70214	transcription start site region 70214	701 bp upstream
Tssr70215	transcription start site region 70215	1038 bp upstream
Tssr70216	transcription start site region 70216	1075 bp upstream
Tssr70217	transcription start site region 70217	1132 bp upstream
Tssr70218	transcription start site region 70218	1463 bp upstream
Tssr70219	transcription start site region 70219	1502 bp upstream
Tssr70220	transcription start site region 70220	1595 bp upstream
Tssr70221	transcription start site region 70221	1676 bp upstream
Tssr70222	transcription start site region 70222	1691 bp upstream
Tssr70223	transcription start site region 70223	1863 bp upstream
Tssr70224	transcription start site region 70224	1920 bp upstream
Tssr70225	transcription start site region 70225	1958 bp upstream
Tssr75813	transcription start site region 75813	333 bp upstream
Tssr75814	transcription start site region 75814	281 bp upstream
Tssr75815	transcription start site region 75815	117 bp upstream
Tssr75816	transcription start site region 75816	56 bp upstream
Tssr75817	transcription start site region 75817	13 bp downstream
Tssr75818	transcription start site region 75818	112 bp downstream
Tssr75819	transcription start site region 75819	311 bp downstream
Tssr75820	transcription start site region 75820	356 bp downstream
Tssr75821	transcription start site region 75821	406 bp downstream
Tssr75822	transcription start site region 75822	522 bp downstream
Tssr75823	transcription start site region 75823	582 bp downstream
Tssr75824	transcription start site region 75824	637 bp downstream
Tssr75825	transcription start site region 75825	758 bp downstream
Tssr75826	transcription start site region 75826	808 bp downstream
Tssr75827	transcription start site region 75827	833 bp downstream
Tssr75828	transcription start site region 75828	977 bp downstream
Tssr75829	transcription start site region 75829	1454 bp downstream
Tssr75830	transcription start site region 75830	1484 bp downstream
Tssr75831	transcription start site region 75831	1504 bp downstream
Tssr75832	transcription start site region 75832	1577 bp downstream
Tssr75833	transcription start site region 75833	1654 bp downstream
Tssr75834	transcription start site region 75834	1920 bp downstream
Tssr75835	transcription start site region 75835	1956 bp downstream
Tssr75836	transcription start site region 75836	1978 bp downstream
Tssr75837	transcription start site region 75837	1998 bp downstream