rs255573921 SNP Detail

Summary

• ID
  rs255573921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3308450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATCAGAT GGCAGGTTTG
  CAAAGTGACT TGTAGCAGAA CCGATGTTAA GATTCTGAAA TATTTGGCTG ACTTCATTAG
  GATGTAAGTT TTTTCAGCCA GTTTATTAAG TTTTGATTTT ACAGAGAGAA ATCTAGTAGT
  TTTGCTTCTT TAAACCTATT ATAAAAATTT TAGACATTGA GACTAGGATA GGGCTCTTTT
  Y
  CGTTGATATA CTAGCCAGGT GTATCCCAAT TCACTTGTTG AAATAACATA TGTTGGCCCT
  ACACGTAATT TTTTCATGCG TTCATGATAA TTCTATAAGC ATGTTAACAA GTGGGTTTAT
  AAATTTGTTC CAGAGTCTTG AAGATGAAGA CTTCTGTAAA ACTGTGACCT CAGCTACTGC
  CAATAAAACT GCGGAGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392857640	MGP_WTSI_15_3228968	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255573921					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392857640	MGP_WTSI_15_3228968	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3308450 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	1102 bp downstream
Rr498565	regulatory region 498565	1357 bp distal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	289 bp upstream
Tssr130395	transcription start site region 130395	1773 bp downstream
Tssr130396	transcription start site region 130396	1736 bp downstream
Tssr130397	transcription start site region 130397	153 bp upstream
Tssr130398	transcription start site region 130398	189 bp upstream
Tssr130399	transcription start site region 130399	297 bp upstream
Tssr130400	transcription start site region 130400	317 bp upstream
Tssr130401	transcription start site region 130401	331 bp upstream
Tssr130402	transcription start site region 130402	399 bp upstream
Tssr130403	transcription start site region 130403	431 bp upstream
Tssr130404	transcription start site region 130404	471 bp upstream
Tssr130405	transcription start site region 130405	491 bp upstream
Tssr130406	transcription start site region 130406	522 bp upstream
Tssr130407	transcription start site region 130407	556 bp upstream
Tssr130408	transcription start site region 130408	592 bp upstream
Tssr130409	transcription start site region 130409	601 bp upstream
Tssr130410	transcription start site region 130410	622 bp upstream
Tssr130411	transcription start site region 130411	678 bp upstream
Tssr130412	transcription start site region 130412	753 bp upstream
Tssr130413	transcription start site region 130413	1006 bp upstream
Tssr130414	transcription start site region 130414	1054 bp upstream
Tssr130415	transcription start site region 130415	1128 bp upstream
Tssr130416	transcription start site region 130416	1425 bp upstream
Tssr133563	transcription start site region 133563	221 bp downstream
Tssr133564	transcription start site region 133564	293 bp downstream
Tssr133565	transcription start site region 133565	341 bp downstream
Tssr133566	transcription start site region 133566	347 bp downstream
Tssr133567	transcription start site region 133567	594 bp downstream
Tssr133568	transcription start site region 133568	665 bp downstream