rs255577816 SNP Detail

Summary

• ID
  rs255577816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156193225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCACACCC CCCCCCCCCC
  CCCCGTGCTG CTGTAGTCAC TGCGGCTGGC CAAGAAAGAC CACAGCTTTA TTCTTAGATC
  CACTGGGCCT TAGGGTAGAA TTCCAGAGAG GAGTAAATCG CGGTGGTGCA AAGAATGCTG
  AGTTGTCTGA CCAGCTCTAC CAGATCAGAG AAACTGAGGT CATGAGGAAG TGAGGAAGGC
  Y
  TAGCAGAGAG CAGGGTGAAA AAAACAGGAC CAAGCCTGAC AGATACTCTC TAATCTTTGT
  TCAAAACAGA GCCCTGGTGC ACACAGTTTT GCTCTTTTCC AGGGGCGGTC TAGTGGTTCT
  ACCTCACTTC AGAGAAGATG TAAGCTTTCA AAAAGTACAG TGCCAGGGCT GGTGAGATGG
  CTCAGTGGGT AAGAGCACTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321445487	CHEV_4_155482877	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255577816					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156193225 () rs orientation: forward

Symbol	Name	Function Class
9430015G10Rik	RIKEN cDNA 9430015G10 gene	1230 bp upstream
Cpgi15500	CpG island 15500	861 bp proximal
Gm69135	predicted gene, 69135	within coordinates
Rr398931	regulatory region 398931	972 bp upstream
Rr606676	regulatory region 606676	within coordinates
Rr606677	regulatory region 606677	273 bp proximal
Rr606678	regulatory region 606678	357 bp proximal
Rr606679	regulatory region 606679	960 bp proximal
Rr606680	regulatory region 606680	1122 bp proximal
Rr606681	regulatory region 606681	1242 bp proximal
Tssr40790	transcription start site region 40790	1203 bp upstream
Tssr40791	transcription start site region 40791	1245 bp upstream