rs255591990 SNP Detail

Summary

• ID
  rs255591990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:132571858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCACCCTTC TTCCAAAAAA ATTTAAGATA
  AAATTATAAA GGGGGAGGGG GTGAGTCAGT CAACGAGGAA AGCAAAGAGC AGTCTCCAAC
  CCGAGATACA CCGGTGTGGT GGCGCCGCCG CCtcttcttc gtcttcttct tcttcttctt
  Y
  tttttcGCGT CGCCCCGCCT GAGGAAGAAG CGCTGCGAGA TGCcgctcgc tctctcgctc
  actcgctcgc tcgctcTCAG CTAACGCTGC CTCAGCCGCC GCCGCCGGAG CCCGGAGCCC
  GAGGGTGCAC GGCGTGTCCC CGGGCGGCTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321694540	CHEV_5_133018889	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255591990					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:132571858 () rs orientation: forward

Symbol	Name	Function Class
Auts2	autism susceptibility candidate 2	within coordinates
Cpgi16710	CpG island 16710	679 bp distal
Cpgi16711	CpG island 16711	within coordinates
D5Mit324	DNA segment, Chr 5, Massachusetts Institute of Technology 324	1947 bp distal
Gm28616	predicted gene 28616	1416 bp upstream
Rr621808	regulatory region 621808	1759 bp distal
Rr621809	regulatory region 621809	658 bp distal
Rr621810	regulatory region 621810	within coordinates
Rr621811	regulatory region 621811	315 bp proximal
Rr621812	regulatory region 621812	926 bp proximal
Rr621813	regulatory region 621813	1427 bp proximal
Tssr53594	transcription start site region 53594	998 bp upstream
Tssr53595	transcription start site region 53595	805 bp upstream
Tssr53596	transcription start site region 53596	633 bp upstream
Tssr53597	transcription start site region 53597	117 bp downstream
Tssr53598	transcription start site region 53598	144 bp downstream
Tssr53599	transcription start site region 53599	344 bp downstream