rs255599665 SNP Detail

Summary

• ID
  rs255599665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128657609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACCTGTGG TCTCCAGGAA GTGGCCGACT
  TTCGCCCTGT CTGCGCTCTC CCTATTGGCG GAACAGAATC CGCGCTGTCC CCAATCATTG
  GTTGGTTACG CAATGGAGAC GTACAATTGG TCGCCTTTTC TCTCGTTAGG CCATGCAAAC
  Y
  CCGCCCTCCC CTGGATCCAC CTTTTTAGAG AGCCGTGGAA AGTGGCCAAG AGGCGTGAGA
  GCGCCGCCGC CGCTGACTAA TGGGAAGAGC CGTTGGTGTG AGGTGGGAGC AAGAGAAACA
  GCGATTGGTT GGATGAGCCT AAGCGCCTGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536211	CHEV_10_128258796	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255599665					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128657609 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2421	CpG island 2421	within coordinates
Ormdl2	ORM1-like 2 (S. cerevisiae)	111 bp upstream
Rr402366	regulatory region 402366	within coordinates
Rr441331	regulatory region 441331	160 bp distal
Rr441332	regulatory region 441332	within coordinates
Rr441333	regulatory region 441333	168 bp proximal
Rr441334	regulatory region 441334	185 bp proximal
Rr441335	regulatory region 441335	503 bp proximal
Rr441336	regulatory region 441336	1558 bp proximal
Sarnp	SAP domain containing ribonucleoprotein	24 bp upstream
Tssr96458	transcription start site region 96458	3 bp downstream
Tssr96459	transcription start site region 96459	5 bp upstream
Tssr96460	transcription start site region 96460	44 bp upstream
Tssr96461	transcription start site region 96461	147 bp upstream
Tssr99967	transcription start site region 99967	108 bp upstream