rs255602309 SNP Detail

Summary

• ID
  rs255602309
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:116950072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGCTCCAC TCACTCACTC
  CTTTTTCCCA TCCCCACTTG TTCCTAAGAT GAACAATCCT GCAGACGCGG CTGGAAGTTA
  TATAAAGAAA CCTCAGTGAT CCACGGTATG GGTTTTTGGT GCACGGCTGG CTGGGTTAGC
  GCCTTTATTC CTTCGTCAAA CACACATTAG GCACTCTTAT GTGCACAGTA CTGTTAGCAC
  W
  TTAGTGTGTA CTCATTCGGA GGAGAGCAGC AATTCTGAGG CTTCCTGGAA ACCTTTGGCT
  GAAGAGTGAC GGTTTCCTTA GGAGGCCCGC TGGACTTCTT CCCTTGGAAT TGTTCTATCT
  CTCAAGGTGG CTGGAACAGG AAGCTTCCTT CCCCGGGGGT TAAGTAAACT TGAGAACAAA
  GTGAAAAGCC TATCGCAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355379000	MGP_WTSI_2_116945327	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255602309					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355379000	MGP_WTSI_2_116945327	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:116950072 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12072	CpG island 12072	418 bp proximal
Gm74661	predicted gene, 74661	886 bp upstream
Rr367269	regulatory region 367269	1025 bp upstream
Rr373730	regulatory region 373730	within coordinates
Rr563062	regulatory region 563062	396 bp proximal
Rr563063	regulatory region 563063	823 bp proximal
Rr563064	regulatory region 563064	1293 bp proximal
Spred1	sprouty protein with EVH-1 domain 1, related sequence	1783 bp upstream
Tssr19479	transcription start site region 19479	843 bp upstream
Tssr19480	transcription start site region 19480	1137 bp upstream
Tssr19481	transcription start site region 19481	1166 bp upstream
Tssr19482	transcription start site region 19482	1236 bp upstream
Tssr19483	transcription start site region 19483	1269 bp upstream
Tssr19484	transcription start site region 19484	1308 bp upstream
Tssr19485	transcription start site region 19485	1330 bp upstream
Tssr19486	transcription start site region 19486	1402 bp upstream
Tssr19487	transcription start site region 19487	1449 bp upstream
Tssr19488	transcription start site region 19488	1460 bp upstream
Tssr19489	transcription start site region 19489	1574 bp upstream
Tssr19490	transcription start site region 19490	1797 bp upstream
Tssr19491	transcription start site region 19491	1869 bp upstream