rs255604677 SNP Detail

Summary

• ID
  rs255604677
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25114242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCTTTTC TAGAAGCCTC
  CAGGAATGAG AGGATATATG AATTATTCCT TCAAAAGAAG TGAATTGATA AACAAAATTT
  TCATTATTTA TTAATTTATT TACTTTATAT CTTATTGCAG CCCTATCCTC CAGGACCCCC
  TCACACAGCC CCTTCCCCCC ACTCTCCCTT TCCCTTCTCC TCTGAGAAGG GGGAGGATTC
  Y
  CCTGGGTATC ACCTCACCCT GGCACATCAA GTCACTGCAG GACTAGGCTC ATCCTTTCCC
  ACTGAGACCA GACAAGATAG TTCAGTTAAG GGAGTGAGAT CCACAGGCAG GCAACAGATT
  CAGGGTCAGC CCCCACTTCA GTTATTGGGG GAGGGCTTGC ATACAGACCA AACTGCACAT
  CTACTACGTA TGTGCTGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322121704	CHEV_7_26199836	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255604677					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25114242 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	1931 bp upstream
Rr164493	regulatory region 164493	742 bp distal
Rr170193	regulatory region 170193	1243 bp distal
Tssr2144	transcription start site region 2144	1867 bp upstream
Tssr2145	transcription start site region 2145	1843 bp upstream
Tssr2146	transcription start site region 2146	1830 bp upstream
Tssr2147	transcription start site region 2147	1785 bp upstream
Tssr71244	transcription start site region 71244	1976 bp upstream
Tssr71245	transcription start site region 71245	1961 bp upstream
Tssr71246	transcription start site region 71246	1932 bp upstream
Tssr71247	transcription start site region 71247	1904 bp upstream