rs255609899 SNP Detail

Summary

• ID
  rs255609899
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:32764672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGGGTG GCGGTGGGAT
  ACCAGAGCTG AGATGCCTCA AACACTTTAA GTAAGTTTTT TTAAAGGAAA AAAGAAAGAG
  AAAAGAAAGA AATAAAAGAA GAACCCTCTG CAGGTCTTTG CAAGTGATAA ACAGTGAAGA
  AAACTTAAGA AATTCTTTTG TCAGTTTTAA TAGCAAATTC TTGTTCATTT AAACACCCTG
  Y
  GATGACTGGA TTTTCAATAA TTGTCTTCCA TTCTACAGCC CCCAACCCTT TATAAAACAA
  ATAAGGGGAA CTGTTTAGAC TAATTTATAC TTTCTATGGA AAGCTACTTG GTGTTGCAGA
  AGTGCCCCCT ATTTCAAATT AACCATTTGC CACTGACATA AATTTTCACC CTATCTTCCC
  CTAAGCCCCT CCTCCTATTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379945573	MGP_WTSI_10_32608482	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255609899					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379945573	MGP_WTSI_10_32608482	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:32764672 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1427	CpG island 1427	1014 bp proximal
Gm66462	predicted gene, 66462	1473 bp upstream
Nkain2	Na+/K+ transporting ATPase interacting 2	within coordinates
Rr224648	regulatory region 224648	within coordinates
Tssr92885	transcription start site region 92885	1133 bp upstream
Tssr97216	transcription start site region 97216	998 bp downstream
Tssr97217	transcription start site region 97217	1227 bp downstream
Tssr97218	transcription start site region 97218	1295 bp downstream
Tssr97219	transcription start site region 97219	1325 bp downstream
Tssr97220	transcription start site region 97220	1404 bp downstream