rs255614985 SNP Detail

Summary

• ID
  rs255614985
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90448748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCAGGCG GCAACTGTGT
  CCAGAGGCCC AGAGTCTGAC TCCAGCTGGG GCAGAACTGG GCCAGGATCT TCCTTAGGTA
  ATGGGGCGAA GGGTGTCGTT GGGCCCTGAT GAATACCTAA GGAATGGTTA TGAGGGAGGA
  GAGGCTGACA GGGTGTGGCC AGGAGGGGAG CCACACAAAA TCTGATCTGC TGGAGGCAGA
  M
  TTTGCTCTTT TCTAGAGATG GGCAGTGGTG GTCTAACACC CTGAGCTCAC TACCTTAGAG
  CCTATGCAAG GGGTAGAGGT GGGCTAAGGT TCCTATCCCT GTTTTGTTGC TTAGGCCTGA
  GGTCTCAGCC AGGCCTCGGG ATGGAAGATA AAAGCCCCTG CTTTCCTCTG TCTTGATTCT
  TCCCAGCTAA GGTTGCCACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358834169	MGP_WTSI_3_90345363	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255614985					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A	A	A	A	C	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358834169	MGP_WTSI_3_90345363	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90448748 () rs orientation: forward

Symbol	Name	Function Class
Rr580398	regulatory region 580398	270 bp distal
Rr580399	regulatory region 580399	42 bp distal
Rr580400	regulatory region 580400	1476 bp proximal
S100a16	S100 calcium binding protein A16	within coordinates
Tssr30222	transcription start site region 30222	1781 bp downstream
Tssr30223	transcription start site region 30223	1750 bp downstream
Tssr30224	transcription start site region 30224	268 bp downstream
Tssr30225	transcription start site region 30225	255 bp downstream
Tssr30226	transcription start site region 30226	228 bp downstream
Tssr30227	transcription start site region 30227	200 bp downstream
Tssr30228	transcription start site region 30228	165 bp downstream