rs255616035 SNP Detail

Summary

• ID
  rs255616035
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:30307514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCCCAT GTGCTGGGAG
  TGCGCCACCA CTGCCTGGCC TTATGGATGT GTCTTAATCG ACTTTAGTGT TGACATCAAG
  ACATAGATAG TAGCTAGCAC TCGGGAGGCA GAGGCAGGTG GATTTCTGAG TTTGAGGCCA
  GCCTGGTCTA CAGAGTGAGT TCCAGGACAG CCAGGGCTAT ACAGAGAAAC CCTGTCTCCA
  C
  AAAAAAAAAA AAAAAAAGAG TAGCTATCAG GCAGGCAGAC TCCTTTTGAA ATGAGTGTCT
  CTGAAGATGA ATAGGGAAGG GACATTGGGG ACCAGAACCT ATGTACTAGA GGGAAAAAAC
  AAACAACCAA ACAACCTTAG GAAGGTTGTG GACATTTTTG AGTTACACAG ACTATATGGC
  AAGTCACCAT ATGTGTCCTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353515429	MGP_WTSI_2_30273022	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255616035					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353515429	MGP_WTSI_2_30273022	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30307514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11436	CpG island 11436	823 bp distal
Crat	carnitine acetyltransferase	1912 bp upstream
Ptpa	protein phosphatase 2 protein activator	within coordinates
Rr554312	regulatory region 554312	1989 bp distal
Rr554313	regulatory region 554313	1350 bp distal
Rr554314	regulatory region 554314	within coordinates
Rr554315	regulatory region 554315	1545 bp proximal
Tssr17115	transcription start site region 17115	1819 bp downstream
Tssr17116	transcription start site region 17116	1425 bp downstream
Tssr17117	transcription start site region 17117	1412 bp downstream
Tssr17118	transcription start site region 17118	1355 bp downstream
Tssr17119	transcription start site region 17119	1281 bp downstream
Tssr23375	transcription start site region 23375	1997 bp upstream
Tssr23376	transcription start site region 23376	1942 bp upstream
Tssr23377	transcription start site region 23377	1890 bp upstream
Tssr23378	transcription start site region 23378	1878 bp upstream
Tssr23379	transcription start site region 23379	1794 bp upstream
Tssr23380	transcription start site region 23380	1728 bp upstream
Tssr23381	transcription start site region 23381	1457 bp upstream