rs255625065 SNP Detail

Summary

• ID
  rs255625065
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGGGCGG GGCGTGGGAA
  GACGTGGGGC TCTTCTTGTT CCCTGATCTC GCCCTGGCGC GCGGCTGTTT GGAGCGGTAG
  GACCGCGCCC AGGCCTGAGG TCCGGCTTGG GCCCTGGAGA CCGGCGAGTG GACGGCCTCG
  AGGGCGCCCT CTGGTGCTTC TAACCCAGGC CTTGGGCGCA GTTTTCCTGG AGAATCCACA
  K
  TCTTGATTCT TTTAACAACT TTCTGGGTGC TCTACCACGT GCAGAGCTCC GCAAGGTACA
  GTGAAAACAA CACAAGATAA ACACCCCGTC TTACAGAGGA CCTCCAAATA AAGTGGATCA
  GGTCTGACAG GTAGTTTAAT GTTTCCAAGT ATCAGTTTTT TGTTTTGTTT TGTTTTGGTA
  AAATCAACAA AAAAAATTTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353663	CHEV_7_109399495	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255625065					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	within coordinates
Rhog	ras homolog family member G	863 bp upstream
Rr652562	regulatory region 652562	904 bp distal
Rr652563	regulatory region 652563	368 bp distal
Rr652564	regulatory region 652564	39 bp distal
Tssr2354	transcription start site region 2354	705 bp downstream
Tssr68328	transcription start site region 68328	1288 bp downstream
Tssr68329	transcription start site region 68329	1267 bp downstream
Tssr68330	transcription start site region 68330	726 bp downstream
Tssr73939	transcription start site region 73939	1607 bp upstream
Tssr73940	transcription start site region 73940	1560 bp upstream
Tssr73941	transcription start site region 73941	1507 bp upstream
Tssr73942	transcription start site region 73942	1422 bp upstream
Tssr73943	transcription start site region 73943	895 bp upstream
Tssr73944	transcription start site region 73944	858 bp upstream
Tssr73945	transcription start site region 73945	843 bp upstream
Tssr73946	transcription start site region 73946	647 bp upstream
Tssr73947	transcription start site region 73947	502 bp upstream
Tssr73948	transcription start site region 73948	466 bp upstream
Tssr73949	transcription start site region 73949	433 bp upstream
Tssr73950	transcription start site region 73950	386 bp upstream