rs255633145 SNP Detail

Summary

• ID
  rs255633145
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136375385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCCAGTC TGTTCCCATC
  CACCTTGGAT AGCTAGCCAG CCAGCCACCG CGTCCCGCAG CGCCCCAAAC ACACTTTCGT
  TTCTTCCCGT GAAGTTGTGC ACGCGTCCTA ACCACCCCAC CATCAGTAAT CCCCGTCCAC
  CTAGCTCAGG CAGAGCTGCC TCCCCAAGGT AAGCTGTTTA CTCGTCGCCT TCCTTGGCGA
  W
  CCTCCCTGGA CAGCTGCGGC AGCGACAGCA GCTGCGCCGC GGCCGGGAGC GTCCGGCGCT
  CCTCCTTCCT CGGTCTCCGA ACTCACTACT GCGGGCCACT CACACACTCG GAGCGGCCGA
  GACCCACCCG GGAGTGTGTG CAGGACTTCG GGAGTGGGCA GGCGCGGGGG CACGCAGCAG
  CCCAGCTCCT CCCGGCCCCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359865496	MGP_WTSI_3_136332588	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255633145					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359865496	MGP_WTSI_3_136332588	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136375385 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13862	CpG island 13862	within coordinates
Gm56786	predicted gene, 56786	within coordinates
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	500 bp upstream
Rr398056	regulatory region 398056	225 bp upstream
Rr398057	regulatory region 398057	1178 bp upstream
Rr585833	regulatory region 585833	1096 bp distal
Rr585834	regulatory region 585834	within coordinates
Rr585835	regulatory region 585835	310 bp distal
Rr585836	regulatory region 585836	289 bp proximal
Rr585837	regulatory region 585837	656 bp proximal
Rr585838	regulatory region 585838	1157 bp proximal
Tssr31863	transcription start site region 31863	452 bp upstream
Tssr31864	transcription start site region 31864	564 bp upstream
Tssr31865	transcription start site region 31865	594 bp upstream
Tssr31866	transcription start site region 31866	632 bp upstream
Tssr31867	transcription start site region 31867	656 bp upstream
Tssr31868	transcription start site region 31868	796 bp upstream
Tssr31869	transcription start site region 31869	806 bp upstream
Tssr31870	transcription start site region 31870	832 bp upstream
Tssr31871	transcription start site region 31871	896 bp upstream
Tssr31872	transcription start site region 31872	945 bp upstream
Tssr31873	transcription start site region 31873	962 bp upstream
Tssr31874	transcription start site region 31874	1055 bp upstream
Tssr31875	transcription start site region 31875	1191 bp upstream
Tssr31876	transcription start site region 31876	1243 bp upstream
Tssr35849	transcription start site region 35849	268 bp downstream