rs255633586 SNP Detail

Summary

• ID
  rs255633586
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:90629676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATTGTTA GCTGAGGTCA
  GAGGTTCTTT GCTTAGAATA TTTAATATCA AGGCAGTGTT CTTGCCCGGC CAAGGAAGCC
  AAGATATGCC TGTTTGGCAA GCAAACCACA GTCCTTAAAA CCAAGCTGCA GAGAATCAAA
  ACTCTGGTAA ATGTGCTGAG GAAATTCATC GGGTTTTTTT TTTTTCTAAG CACTGTGAAC
  K
  TTTTTCTTTT TCTGTGACAG AACTTTCTTG GCTTCCAGAA ACTTTCTGTG TTTGCTGATT
  TAAGCTGTAG CGAGCAGCTC CGAGTTCAGC CACTCTCTTG CCCTGATTAT TGTAAGGAAA
  GAATTAAAAG CCGACAACCA CCCTCACCCC CCCACCCCCA TCCCATGACA TCATTGCAAC
  TGAACAAATA TTGCTTTAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325276379	CHEV_16_90833033	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255633586					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90629676 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eva1c	eva-1 homolog C			Intron
				Noncoding-Transcript-Variant
Rr519213	regulatory region 519213			1665 bp distal
Rr519214	regulatory region 519214			460 bp proximal
Tssr139315	transcription start site region 139315			1910 bp downstream
Tssr139316	transcription start site region 139316			1638 bp downstream
Tssr139317	transcription start site region 139317			1564 bp downstream
Tssr139318	transcription start site region 139318			11 bp downstream