rs255639921 SNP Detail

Summary

• ID
  rs255639921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184467213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGGAGA GGAGAGGAGA
  GGAGAGGAGA GGAGAGGAGA GGAGAGGAGA GGAGAGGAGA GGAGAGGAGA GGAGAGGAAA
  AGAAAAGAAA AGAAAAGAAA AGAAAAGAAA AGAAAAGAAA AGAAAAGAGG GGAAGGACTT
  TGGGTCACTC TCTCTTGCTC CAGGCCCAAG CCCTGTAGAC CAGTCGCTTT GGCGGGAGCT
  Y
  GGAACACTGC CCTCCTCCTT ACCCCTACCC TTCAGAACCA AGAAAGCAGC AGGAAACCCG
  GGGCTCGCCC GGAGTTCAGG TCATCTCCTG TTTTTTTGAT GGGCTCAAAC TTGGGCTAAA
  TGAGCGGATA TGCCTGCGAG ATTGGTCTCA AAATAGAAGC GGTCCTAGTA TTTTAGGATA
  CTGCAGAAAT CCTTATTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320168848	CHEV_1_186558895	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs255639921					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184467213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1158	CpG island 1158	1777 bp distal
Cpgi1159	CpG island 1159	270 bp distal
Gm34342	predicted gene, 34342	within coordinates
Rr425267	regulatory region 425267	849 bp distal
Rr425268	regulatory region 425268	within coordinates
Tssr10590	transcription start site region 10590	390 bp upstream
Tssr15648	transcription start site region 15648	4 bp downstream