rs255655159 SNP Detail

Summary

• ID
  rs255655159
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:103251768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATACACA CACAGGAAGG
  AAAATTAGAC GAGATCATGT ATGTGAGCCA CTTAGTGCCC TTCACCCTGC CCTTGCATTG
  GCACACAATA GCAACACAAA ACCCCAAAGC AGGTGATTAA AGGCACTTGT CACTAAGCCC
  AATAACCTGA ATTTGATTAT TTTTCTCTTT TCTCTTTCTG CCCCCCCCCC CCCCCCCCCC
  Y
  GTCTTTTGAG ACAGGGTTTC TCTATGTAGC CCTGGCTGTC CTGGAACTTG CTGTATAACT
  TGGCTGGCCT TAAACTCAGA GATTCAACTG CCTCTGCCTG CCTCCTTAGT ACTGGGGTTA
  AAGGTGTGTG CCACCCCCTC TGCCTGTCAT GAATTCACTC AGTGGAAGAA AACTAAGTTC
  TACAAGTTGT CTTCTGATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395230258	MGP_WTSI_15_103173772	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255655159					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395230258	MGP_WTSI_15_103173772	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:103251768 () rs orientation: forward

Symbol	Name	Function Class
Itga5	integrin alpha 5 (fibronectin receptor alpha)	945 bp downstream
Rr404654	regulatory region 404654	572 bp downstream
Rr510619	regulatory region 510619	1257 bp distal
Rr510620	regulatory region 510620	307 bp distal
Rr510621	regulatory region 510621	719 bp distal
Rr510622	regulatory region 510622	247 bp proximal
Tssr136772	transcription start site region 136772	1217 bp downstream
Tssr136773	transcription start site region 136773	1297 bp downstream
Tssr136774	transcription start site region 136774	1371 bp downstream
Tssr136775	transcription start site region 136775	1389 bp downstream
Tssr136776	transcription start site region 136776	1433 bp downstream
Tssr136777	transcription start site region 136777	1465 bp downstream