rs255660773 SNP Detail

Summary

• ID
  rs255660773
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122520187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGCCTACT GCCGGAGCTG
  TCTCTTCAAG GGTGATGTAT GAGGCTGCTG AGGGTCCTGT GTCCTTAAGT CACAGCAGCG
  CCCCATCCCC CGACCCTCAC TGCACTGTGC AGACGTGGAG ATAAGTTTAA GTAAAGCCGT
  GGGGTACGGT TCAACCTTTC CCACCGAAGG GGTTCTACTC TCTCCCTCGG CCAACATCCA
  C
  TCTATGTAGG GGTGTCCCCA CCAACTTACC TCCAACAAAA GGCTCTTGCA GGCCATTCTG
  AGTCCATGAG GCAGATACTA CCATACAGCG TGGGTAAGCA GTCACTGGAT ACAGGCTGAA
  GACTCAGGGC ACAGCGGGTA GCATGACGTG GTGTACAGAC AGCCCCATCA CAAGGCCCAA
  TGTCTGGCAA GTCCCTGTTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376303031	MGP_WTSI_8_124317348	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255660773					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376303031	MGP_WTSI_8_124317348	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122520187 () rs orientation: forward

Symbol	Name	Function Class
Rr671926	regulatory region 671926	358 bp distal
Tssr79823	transcription start site region 79823	1109 bp downstream
Tssr79824	transcription start site region 79824	976 bp downstream
Tssr79825	transcription start site region 79825	960 bp downstream
Tssr83237	transcription start site region 83237	1259 bp upstream
Tssr83238	transcription start site region 83238	1238 bp upstream
Tssr83239	transcription start site region 83239	1216 bp upstream
Tssr83240	transcription start site region 83240	1175 bp upstream
Tssr83241	transcription start site region 83241	1099 bp upstream