rs255667039 SNP Detail

Summary

• ID
  rs255667039
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108395485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGAGAAG GTTACCATTA
  CCAGGCCCCG CTTTTCTTCC ATTAGAACCG ATTCTTCCAT AAGCGCAGTT GATACACGTC
  ACCTCTGTGC GCTCCGGAAA GAGATCCTCC TCTGTATATG GTATCAAACT CTCGGAGCTC
  TAAAATTCCG CTTTAAATCC TCACTTAAAT GCAGCCTCCC CCCCCCCTTT TTTTTTTCCA
  C
  CTCCGCGTGG GTGGGAGGGG CTTGCCTTTC TGTTCTTGAT AAGGGCTGTT TCTTAACCTT
  GATTAACTTG ATCAATGCTT TGCCGGTTTT TTTCTTTGTA ATTTCTAAAA TGTCCAGCAA
  AAATTTCTAA AATCTGCCTG TCACTATAAA AACTATGTAA CTGAAGTTCT TCTCAGCTTT
  TTTTTTTCTT TCCACATTTT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378868750	MGP_WTSI_9_108420617	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255667039					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378868750	MGP_WTSI_9_108420617	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108395485 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22342	CpG island 22342	172 bp distal
Gm68283	predicted gene, 68283	1024 bp downstream
Qrich1	glutamine-rich 1	within coordinates
Rr205749	regulatory region 205749	within coordinates
Tssr87123	transcription start site region 87123	1318 bp downstream
Tssr87124	transcription start site region 87124	1280 bp downstream
Tssr87125	transcription start site region 87125	1169 bp downstream
Tssr87126	transcription start site region 87126	1145 bp downstream
Tssr87127	transcription start site region 87127	1116 bp downstream
Tssr87128	transcription start site region 87128	759 bp downstream
Tssr87129	transcription start site region 87129	666 bp downstream
Tssr87130	transcription start site region 87130	580 bp downstream
Tssr87131	transcription start site region 87131	562 bp downstream
Tssr87132	transcription start site region 87132	530 bp downstream
Tssr91531	transcription start site region 91531	57 bp upstream