rs255673124 SNP Detail

Summary

• ID
  rs255673124
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:34885658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGAAAGT ACAGGCTGGG
  GCATGCAGCA CCGCCTACCC CAGCACGTCT TGCTCACACT CCTTGAGCGC AGGGACAGCC
  TGGTCTTTGA GCTCTTCTCC CCCACCTCAC CCAAGTCTGG GTGTAGCCCC TTCGTTCACT
  CAACTAGGAA GTCCTTTCTA AGTCTGATCC CAGTCCCCTC CTGTCTCCCC TGACTAGGGT
  Y
  GGGGGTGGGG GGGAAGGGGG AGTTCCCTTT AAGGGCGGTG GGGGAGGGGG CTGCCGGCCG
  TCCCTCCTTC CGTCCCTCCC TGGATCCAGC CGCCCGGGGG CCCCCGGGGG CCCGGGCCCC
  GTGCCAGCGC ATGCGCCCGC CTGTGGGCGC TGTCCCGGGC TGCGAGGGCC GCGAGCGCAC
  CGACAGACGA ACCGACCGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss370970145	MGP_WTSI_7_35971252	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs255673124					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370970145	MGP_WTSI_7_35971252	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:34885658 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18861	CpG island 18861	within coordinates
Gm38988	predicted gene, 38988	1274 bp upstream
Rr645330	regulatory region 645330	511 bp distal
Rr645331	regulatory region 645331	within coordinates
Rr645332	regulatory region 645332	244 bp distal
Slc7a10	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	152 bp upstream
Tssr65893	transcription start site region 65893	125 bp upstream
Tssr65894	transcription start site region 65894	137 bp upstream
Tssr65895	transcription start site region 65895	176 bp upstream