rs255674306 SNP Detail

Summary

• ID
  rs255674306
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76132877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTGACCCT GTCCACTGTG
  GCCATTTTCA CTTTTGTTGG GGAGGTGAAG GGCTTTGTCC GGGAGAATGT CTGGACCTAC
  TATGTCTCCT ACGCCATCTT CTTCATCTCC CTCATTGTTC TCAGCTGTTG TGGGGACTTC
  CGGCGAAAGC ATCCCTGGAA CCTTGTTGCT CTGGTAACTC TCAATCCCTG AGCCCAGTTC
  M
  CCTAGGCCTG TGGGACAGGA CAGGGAGGTT GGACAGGGTT GGACCAAGAG CAGCTCCCCA
  CACCCAAGGC CCCCCCTGTG ATCCTCTTCC GCAGTCGATC CTGACCGTCA GCTTGTCCTA
  CATGGTGGGC ATGATAGCCA GCTTTTACAA CACGGAGGCA GTCATCATGG CCGTGGGCAT
  CACCACAGCT GTCTGCTTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394611513	MGP_WTSI_15_76079107	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	C	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255674306					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	C	C	A	A	A	A	A	A	C	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394611513	MGP_WTSI_15_76079107	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76132877 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7222	CpG island 7222	967 bp distal
Grina	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	within coordinates
Mir6953	microRNA 6953	419 bp downstream
Tssr131720	transcription start site region 131720	1871 bp downstream
Tssr131721	transcription start site region 131721	1846 bp downstream
Tssr131722	transcription start site region 131722	1821 bp downstream
Tssr131723	transcription start site region 131723	1654 bp downstream
Tssr131724	transcription start site region 131724	1269 bp downstream
Tssr131725	transcription start site region 131725	1136 bp downstream
Tssr131726	transcription start site region 131726	1068 bp downstream
Tssr131727	transcription start site region 131727	1001 bp downstream
Tssr131728	transcription start site region 131728	982 bp downstream
Tssr131729	transcription start site region 131729	841 bp downstream
Tssr131730	transcription start site region 131730	821 bp downstream
Tssr131731	transcription start site region 131731	754 bp downstream
Tssr131732	transcription start site region 131732	724 bp downstream
Tssr131733	transcription start site region 131733	688 bp downstream
Tssr131734	transcription start site region 131734	659 bp downstream
Tssr131735	transcription start site region 131735	605 bp downstream
Tssr131736	transcription start site region 131736	535 bp downstream
Tssr131737	transcription start site region 131737	379 bp downstream
Tssr131738	transcription start site region 131738	205 bp downstream
Tssr131739	transcription start site region 131739	179 bp downstream
Tssr131740	transcription start site region 131740	114 bp downstream
Tssr131741	transcription start site region 131741	53 bp downstream
Tssr131742	transcription start site region 131742	122 bp upstream
Tssr131743	transcription start site region 131743	139 bp upstream
Tssr131744	transcription start site region 131744	166 bp upstream
Tssr131745	transcription start site region 131745	299 bp upstream
Tssr131746	transcription start site region 131746	341 bp upstream
Tssr131747	transcription start site region 131747	399 bp upstream
Tssr131748	transcription start site region 131748	560 bp upstream
Tssr131749	transcription start site region 131749	590 bp upstream
Tssr131750	transcription start site region 131750	797 bp upstream
Tssr131751	transcription start site region 131751	869 bp upstream
Tssr134960	transcription start site region 134960	1016 bp upstream
Tssr134961	transcription start site region 134961	629 bp upstream
Tssr134962	transcription start site region 134962	504 bp upstream
Tssr134963	transcription start site region 134963	632 bp downstream
Tssr134964	transcription start site region 134964	682 bp downstream
Tssr134965	transcription start site region 134965	714 bp downstream
Tssr134966	transcription start site region 134966	828 bp downstream
Tssr134967	transcription start site region 134967	1224 bp downstream