rs255700054 SNP Detail

Summary

• ID
  rs255700054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:46991759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCCGTAG GCAATGGGCG
  TCGCCTGTCC CTTCAATTTT CCTCATCCCC CCAACCCATC CCAGGCTACC TGCCAGGCCG
  GGCCGGGGTG GGGCCGCGGG TCCTCGCGCT GCCAGCAGCC TAGAACCCGT TGCCCGCCAA
  CCGATTCCTC GGTCCCCAAC GAGATAAACA CTGCCAGACT TCGTCCTTCC GGCGGGCAGC
  R
  GGACGCGCAC GTGCAGTGAG AATTGCCGGC CCGACAGCTT CAGGGACTTG TAGTCCACGA
  ATTACCCCAG GGCCGAAAGA TGGGGAGCGG GTGGGCGGGG CCGGTTTGTG CGCATGCGCA
  GAACACCAGT TCACGTCGCA CGCCTGAGGG TCACTGGGTA ATGTAGTTCT TTGTGGTCCG
  GGCAGGGGAT GGCGGAGGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss398326252	MGP_WTSI_17_46817782	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs255700054					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398326252	MGP_WTSI_17_46817782	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:46991759 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9239	CpG island 9239	within coordinates
Klhdc3	kelch domain containing 3	within coordinates
Mea1	male enhanced antigen 1	within coordinates
Rr405317	regulatory region 405317	within coordinates
Rr527794	regulatory region 527794	1484 bp distal
Rr527795	regulatory region 527795	within coordinates
Tssr5136	transcription start site region 5136	52 bp upstream
Tssr5137	transcription start site region 5137	102 bp downstream
Tssr144872	transcription start site region 144872	355 bp downstream
Tssr144873	transcription start site region 144873	147 bp upstream
Tssr144874	transcription start site region 144874	205 bp upstream
Tssr144875	transcription start site region 144875	1143 bp upstream
Tssr144876	transcription start site region 144876	1202 bp upstream
Tssr148367	transcription start site region 148367	99 bp upstream
Tssr148368	transcription start site region 148368	77 bp upstream
Tssr148369	transcription start site region 148369	58 bp upstream
Tssr148370	transcription start site region 148370	within coordinates
Tssr148371	transcription start site region 148371	14 bp downstream
Tssr148372	transcription start site region 148372	37 bp downstream
Tssr148373	transcription start site region 148373	1068 bp downstream
Tssr148374	transcription start site region 148374	1080 bp downstream