rs255702485 SNP Detail

Summary

• ID
  rs255702485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:52172647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGCGA GAGCAGCCCA
  GCCCGCTCAA AACCTACACC ATGTGGCATG GGTCCTCGGC AAGGACTTAT ACACGGCAGT
  CAGGACACAG TGGAACTGGG CAACGGAAAA GATTAGGTCT CTTACCCAGT CTTCTCACAC
  CCGAGTTCCC TCGCTTCTCT GAAGGAAAAA AAAAAAAGCT AACCACAGAG CTCTAGCTCA
  R
  AGCATGCACA TCACGCTAGG GAATGGCATG GGCTCAGCTC AAAAACGTTT TCAACCCCAC
  CGTGGGCCAA CACAGGCACC TGCTTGAGCA AGTTGGGAAG ACAAAGGTCA AAAGCAAGTG
  AGAAAGACTG GAGCCGGGGC GCTCCTTCAG AGATCTCCTT TTGGGTCAGA CTCCTCTGGA
  TGTTAACTGG GCAAGAGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383371471	MGP_WTSI_11_52095322	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255702485					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383371471	MGP_WTSI_11_52095322	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:52172647 () rs orientation: forward

Symbol	Name	Function Class
A630014C17Rik	RIKEN cDNA A630014C17 gene	within coordinates
Cpgi2853	CpG island 2853	555 bp proximal
Rr369198	regulatory region 369198	859 bp upstream
Rr446835	regulatory region 446835	741 bp proximal
Rr446836	regulatory region 446836	1501 bp proximal
Tcf7	transcription factor 7, T cell specific	within coordinates
Tssr101334	transcription start site region 101334	1787 bp downstream
Tssr101335	transcription start site region 101335	868 bp upstream
Tssr107876	transcription start site region 107876	1599 bp upstream
Tssr107877	transcription start site region 107877	1571 bp upstream
Tssr107878	transcription start site region 107878	36 bp upstream
Tssr107879	transcription start site region 107879	13 bp downstream
Tssr107880	transcription start site region 107880	475 bp downstream
Tssr107881	transcription start site region 107881	499 bp downstream
Tssr107882	transcription start site region 107882	744 bp downstream
Tssr107883	transcription start site region 107883	938 bp downstream
Tssr107884	transcription start site region 107884	983 bp downstream
Tssr107885	transcription start site region 107885	1410 bp downstream
Tssr107886	transcription start site region 107886	1428 bp downstream
Tssr107887	transcription start site region 107887	1482 bp downstream