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rs255711387 SNP Detail
Summary
  • ID
    rs255711387
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr19:5848164 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTGGCTCAAG TGAGGTGACA
AAAGGCTAAA GTGGATGAGA TGATCGTAAG CATTTAAACT CAACATGCAT ATTTGGAAAT
GTGGGGGAAA AGTGTCTTAC CCTAGATGTT TAGCCATGGT CAAATTAGAC CCCTGACTTT
CTGGAAACAA AATATGTAGT TACCTTTTAC TCTGACCATC ATCTCCCACC TGCCTAAGGT
M
CTTAGTCCTT AGTTAGACGG CCTCTATGCC AGGCCTGCAA TTATTAAATG CTCATCACTG
CATGGAGAAT AAAATTTGTC TTTCCTGCCT TAAAGTTAAT TTCGGTCTTC TGGCTCAAAT
CCTGATCTGG TCCACTTAAG TGTTCGAAGT CAAGTTTCTG AAAAGATTAG AGAAGAACAT
CCCCCCAAAA TTGCCCACAC                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss401662575 MGP_WTSI_19_5798136 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs255711387 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss401662575 MGP_WTSI_19_5798136 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:5848164 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm55521 predicted gene, 55521 864 bp downstream
Malat1 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) within coordinates
Rr543161 regulatory region 543161 within coordinates
Rr543162 regulatory region 543162 424 bp proximal
Rr543163 regulatory region 543163 1282 bp proximal
Tssr5415 transcription start site region 5415 1270 bp upstream
Tssr5416 transcription start site region 5416 821 bp upstream
Tssr5417 transcription start site region 5417 890 bp downstream
Tssr5418 transcription start site region 5418 1373 bp downstream
Tssr157645 transcription start site region 157645 1755 bp upstream
Tssr157646 transcription start site region 157646 1653 bp upstream
Tssr157647 transcription start site region 157647 1566 bp upstream
Tssr157648 transcription start site region 157648 1399 bp upstream
Tssr157649 transcription start site region 157649 1307 bp upstream
Tssr157650 transcription start site region 157650 1242 bp upstream
Tssr157651 transcription start site region 157651 1172 bp upstream
Tssr157652 transcription start site region 157652 1032 bp upstream
Tssr157653 transcription start site region 157653 948 bp upstream
Tssr157654 transcription start site region 157654 894 bp upstream
Tssr157655 transcription start site region 157655 868 bp upstream
Tssr157656 transcription start site region 157656 835 bp upstream
Tssr157657 transcription start site region 157657 715 bp upstream
Tssr157658 transcription start site region 157658 609 bp upstream
Tssr157659 transcription start site region 157659 505 bp upstream
Tssr157660 transcription start site region 157660 409 bp upstream
Tssr157661 transcription start site region 157661 376 bp upstream
Tssr157662 transcription start site region 157662 283 bp upstream
Tssr157663 transcription start site region 157663 222 bp upstream
Tssr157664 transcription start site region 157664 108 bp upstream
Tssr157665 transcription start site region 157665 99 bp upstream
Tssr157666 transcription start site region 157666 67 bp upstream
Tssr157667 transcription start site region 157667 174 bp downstream
Tssr157668 transcription start site region 157668 221 bp downstream
Tssr157669 transcription start site region 157669 236 bp downstream
Tssr157670 transcription start site region 157670 256 bp downstream
Tssr157671 transcription start site region 157671 273 bp downstream
Tssr157672 transcription start site region 157672 322 bp downstream
Tssr157673 transcription start site region 157673 339 bp downstream
Tssr157674 transcription start site region 157674 369 bp downstream
Tssr157675 transcription start site region 157675 388 bp downstream
Tssr157676 transcription start site region 157676 399 bp downstream
Tssr157677 transcription start site region 157677 421 bp downstream
Tssr157678 transcription start site region 157678 433 bp downstream
Tssr157679 transcription start site region 157679 470 bp downstream
Tssr157680 transcription start site region 157680 525 bp downstream
Tssr157681 transcription start site region 157681 554 bp downstream
Tssr157682 transcription start site region 157682 572 bp downstream
Tssr157683 transcription start site region 157683 598 bp downstream
Tssr157684 transcription start site region 157684 614 bp downstream
Tssr157685 transcription start site region 157685 624 bp downstream
Tssr157686 transcription start site region 157686 639 bp downstream
Tssr157687 transcription start site region 157687 708 bp downstream
Tssr157688 transcription start site region 157688 758 bp downstream
Tssr157689 transcription start site region 157689 789 bp downstream
Tssr157690 transcription start site region 157690 867 bp downstream
Tssr157691 transcription start site region 157691 913 bp downstream
Tssr157692 transcription start site region 157692 967 bp downstream
Tssr157693 transcription start site region 157693 1024 bp downstream
Tssr157694 transcription start site region 157694 1082 bp downstream
Tssr157695 transcription start site region 157695 1146 bp downstream
Tssr157696 transcription start site region 157696 1167 bp downstream
Tssr157697 transcription start site region 157697 1216 bp downstream
Tssr157698 transcription start site region 157698 1232 bp downstream
Tssr157699 transcription start site region 157699 1290 bp downstream
Tssr157700 transcription start site region 157700 1339 bp downstream
Tssr157701 transcription start site region 157701 1357 bp downstream
Tssr157702 transcription start site region 157702 1393 bp downstream
Tssr157703 transcription start site region 157703 1444 bp downstream
Tssr157704 transcription start site region 157704 1470 bp downstream
Tssr157705 transcription start site region 157705 1491 bp downstream
Tssr157706 transcription start site region 157706 1539 bp downstream
Tssr157707 transcription start site region 157707 1585 bp downstream
Tssr157708 transcription start site region 157708 1595 bp downstream
Tssr157709 transcription start site region 157709 1607 bp downstream
Tssr157710 transcription start site region 157710 1626 bp downstream
Tssr157711 transcription start site region 157711 1645 bp downstream
Tssr157712 transcription start site region 157712 1682 bp downstream
Tssr157713 transcription start site region 157713 1709 bp downstream
Tssr157714 transcription start site region 157714 1760 bp downstream
Tssr157715 transcription start site region 157715 1777 bp downstream
Tssr157716 transcription start site region 157716 1821 bp downstream
Tssr157717 transcription start site region 157717 1848 bp downstream
Tssr157718 transcription start site region 157718 1893 bp downstream
Tssr157719 transcription start site region 157719 1947 bp downstream
Tssr157720 transcription start site region 157720 1966 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory