rs255713348 SNP Detail

Summary

• ID
  rs255713348
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9304745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTTCAGG GCCACACAGG
  AAAACGCCTA TTGTGGTGCT TTGGAGAGAG AAAAGAAAGT TTCAGTCAAC ATGAGTTGGG
  CAGCAGCGAG GGTAGTAAAT TTCCTGTTCA GTTGAGGCCA CTCTATTCCT ACTTTTTTCC
  ACAAGGGACA AAAATGTTCA ATTTACTCAC AAGGAGCAGG CTCGACTGAG TATAGAGACG
  R
  CTGGCAAACT CAAATGGAGT TAACATCCCC AGAAAATGAA ACCCAAGCAG GGGTTTGGAA
  ATTTCTTCCA CAGAGGTATC ATGGTAGTGG CTGATTTTGT GTGTCAACTT GATACAAGCT
  GGAGTTATCA CAGAGAAAGG AGCCTCCCTT GAGGAAATGC TTTCATGAGA TCCAGCTGTA
  AGGCATTTTC TCAACTAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403025300	MGP_WTSI_X_9015632	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs255713348					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403025300	MGP_WTSI_X_9015632	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9304745 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160519	transcription start site region 160519	1861 bp downstream
Tssr160520	transcription start site region 160520	1797 bp downstream
Tssr160521	transcription start site region 160521	1743 bp downstream
Tssr160522	transcription start site region 160522	1626 bp downstream
Tssr162882	transcription start site region 162882	1842 bp upstream
Tssr162883	transcription start site region 162883	1452 bp upstream
Tssr162884	transcription start site region 162884	1387 bp upstream
Tssr162885	transcription start site region 162885	1351 bp upstream
Tssr162886	transcription start site region 162886	1331 bp upstream
Tssr162887	transcription start site region 162887	1293 bp upstream
Tssr162888	transcription start site region 162888	1239 bp upstream
Tssr162889	transcription start site region 162889	1221 bp upstream
Tssr162890	transcription start site region 162890	1151 bp upstream
Tssr162891	transcription start site region 162891	1123 bp upstream
Tssr162892	transcription start site region 162892	1068 bp upstream
Tssr162893	transcription start site region 162893	963 bp upstream
Tssr162894	transcription start site region 162894	927 bp upstream
Tssr162895	transcription start site region 162895	871 bp upstream
Tssr162896	transcription start site region 162896	844 bp upstream
Tssr162897	transcription start site region 162897	813 bp upstream
Tssr162898	transcription start site region 162898	793 bp upstream
Tssr162899	transcription start site region 162899	653 bp upstream
Tssr162900	transcription start site region 162900	635 bp upstream
Tssr162901	transcription start site region 162901	606 bp upstream
Tssr162902	transcription start site region 162902	523 bp upstream
Tssr162903	transcription start site region 162903	469 bp upstream
Tssr162904	transcription start site region 162904	362 bp upstream
Tssr162905	transcription start site region 162905	288 bp upstream
Tssr162906	transcription start site region 162906	273 bp upstream
Tssr162907	transcription start site region 162907	201 bp upstream
Tssr162908	transcription start site region 162908	170 bp upstream
Tssr162909	transcription start site region 162909	1417 bp downstream
Tssr162910	transcription start site region 162910	1442 bp downstream
Tssr162911	transcription start site region 162911	1496 bp downstream